Standardizing Analysis of Circulating MicroRNA: Clinical and Biological Relevance

被引:83
作者
Farina, Nicholas H. [1 ,2 ]
Wood, Marie E. [1 ,3 ]
Perrapato, Scott D. [1 ,4 ]
Francklyn, Christopher S. [1 ,2 ]
Stein, Gary S. [1 ,2 ]
Stein, Janet L. [1 ,2 ]
Lian, Jane B. [1 ,2 ]
机构
[1] Univ Vermont, Coll Med, Vermont Canc Ctr Basic & Translat Res, Burlington, VT 05405 USA
[2] Univ Vermont, Coll Med, Dept Biochem, Burlington, VT 05405 USA
[3] Univ Vermont, Coll Med, Div Hematol Oncol, Dept Med, Burlington, VT 05405 USA
[4] Univ Vermont, Coll Med, Div Urol, Dept Surg, Burlington, VT 05405 USA
关键词
CIRCULATING microRNA; c-miRNA; miRNA; SERUM; PLASMA; qPCR; RNA ISOLATION; BIOMARKER; CLINICAL SAMPLE; CANCER; SERUM; RNA;
D O I
10.1002/jcb.24745
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Circulating microRNAs (c-miRNAs) provide a new dimension as clinical biomarkers for disease diagnosis, progression, and response to treatment. However, the discovery of individual miRNAs from biofluids that reliably reflect disease states is in its infancy. The highly variable nature of published studies exemplifies a need to standardize the analysis of miRNA in circulation. Here, we show that differential sample handling of serum leads to inconsistent and incomparable results. We present a standardized method of RNA isolation from serum that eliminates multiple freeze/thaw cycles, provides at least three normalization mechanisms, and can be utilized in studies that compare both archived and prospectively collected samples. It is anticipated that serum processed as described here can be profiled, either globally or on a gene by gene basis, for c-miRNAs and other non-coding RNA in the circulation to reveal novel, clinically relevant epigenetic signatures for a wide range of diseases. J. Cell. Biochem. 115: 805-811, 2014. (c) 2013 Wiley Periodicals, Inc.
引用
收藏
页码:805 / 811
页数:7
相关论文
共 25 条
[1]   Genome-Wide Epigenetic Regulation of miRNAs in Cancer [J].
Baer, Constance ;
Claus, Rainer ;
Plass, Christoph .
CANCER RESEARCH, 2013, 73 (02) :473-477
[2]   Changes in circulating microRNA levels associated with prostate cancer [J].
Bryant, R. J. ;
Pawlowski, T. ;
Catto, J. W. F. ;
Marsden, G. ;
Vessella, R. L. ;
Rhees, B. ;
Kuslich, C. ;
Visakorpi, T. ;
Hamdy, F. C. .
BRITISH JOURNAL OF CANCER, 2012, 106 (04) :768-774
[3]   Characterization of microRNAs in serum: a novel class of biomarkers for diagnosis of cancer and other diseases [J].
Chen, Xi ;
Ba, Yi ;
Ma, Lijia ;
Cai, Xing ;
Yin, Yuan ;
Wang, Kehui ;
Guo, Jigang ;
Zhang, Yujing ;
Chen, Jiangning ;
Guo, Xing ;
Li, Qibin ;
Li, Xiaoying ;
Wang, Wenjing ;
Zhang, Yan ;
Wang, Jin ;
Jiang, Xueyuan ;
Xiang, Yang ;
Xu, Chen ;
Zheng, Pingping ;
Zhang, Juanbin ;
Li, Ruiqiang ;
Zhang, Hongjie ;
Shang, Xiaobin ;
Gong, Ting ;
Ning, Guang ;
Wang, Jun ;
Zen, Ke ;
Zhang, Junfeng ;
Zhang, Chen-Yu .
CELL RESEARCH, 2008, 18 (10) :997-1006
[4]   Lipoxin A4-Induced Heme Oxygenase-1 Protects Cardiomyocytes against Hypoxia/Reoxygenation Injury via p38 MAPK Activation and Nrf2/ARE Complex [J].
Chen, Xiao-Qing ;
Wu, Sheng-Hua ;
Zhou, Yu ;
Tang, Yan-Rong .
PLOS ONE, 2013, 8 (06)
[5]   Circulating microRNAs in hematological diseases: principles, challenges, and perspectives [J].
Grasedieck, Sarah ;
Sorrentino, Antonio ;
Langer, Christian ;
Buske, Christian ;
Doehner, Hartmut ;
Mertens, Daniel ;
Kuchenbauer, Florian .
BLOOD, 2013, 121 (25) :4977-4984
[6]   Identification of a pan-cancer oncogenic microRNA superfamily anchored by a central core seed motif [J].
Hamilton, Mark P. ;
Rajapakshe, Kimal ;
Hartig, Sean M. ;
Reva, Boris ;
McLellan, Michael D. ;
Kandoth, Cyriac ;
Ding, Li ;
Zack, Travis I. ;
Gunaratne, Preethi H. ;
Wheeler, David A. ;
Coarfa, Cristian ;
McGuire, Sean E. .
NATURE COMMUNICATIONS, 2013, 4
[7]   Sensitive PCR-based quantitation of cell-free circulating microRNAs [J].
Hastings, Michelle L. ;
Palma, Jaime ;
Duelli, Dominik M. .
METHODS, 2012, 58 (02) :144-150
[8]   Plasma Components Affect Accuracy of Circulating Cancer-Related MicroRNA Quantitation [J].
Kim, Dong-Ja ;
Linnstaedt, Sarah ;
Palma, Jaime ;
Park, Joon Cheol ;
Ntrivalas, Evangelos ;
Kwak-Kim, Joanne Y. H. ;
Gilman-Sachs, Alice ;
Beaman, Kenneth ;
Hastings, Michelle L. ;
Martin, Jeffrey N. ;
Duelli, Dominik M. .
JOURNAL OF MOLECULAR DIAGNOSTICS, 2012, 14 (01) :71-80
[9]   Differential Stability of Cell-Free Circulating microRNAs: Implications for Their Utilization as Biomarkers [J].
Koeberle, Verena ;
Pleli, Thomas ;
Schmithals, Christian ;
Alonso, Eduardo Augusto ;
Haupenthal, Joerg ;
Boenig, Halvard ;
Peveling-Oberhag, Jan ;
Biondi, Ricardo M. ;
Zeuzem, Stefan ;
Kronenberger, Bernd ;
Waidmann, Oliver ;
Piiper, Albrecht .
PLOS ONE, 2013, 8 (09)
[10]   Dampening Enthusiasm for Circulating MicroRNA in Breast Cancer [J].
Leidner, Rom S. ;
Li, Li ;
Thompson, Cheryl L. .
PLOS ONE, 2013, 8 (03)