Where splicing joins chromatin

被引:44
作者
Hnilicova, Jarmila [1 ]
Stanek, David [1 ]
机构
[1] Acad Sci Czech Republ, Inst Mol Genet, Dept RNA Biol, Prague, Czech Republic
关键词
chromatin; exon; alternative splicing; transcription; snRNP; histone methylation; histone acetylation; nucleosome; INTRON-CONTAINING GENES; IN-SITU TRANSCRIPTION; GENOME-WIDE ANALYSIS; DNA-DAMAGE; HISTONE DEACETYLASE; EXON INCLUSION; U1; SNRNP; RNA; PROMOTER; RECRUITMENT;
D O I
10.4161/nucl.2.3.15876
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
There are numerous data suggesting that two key steps in gene expression-transcription and splicing influence each other closely. For a long time it was known that chromatin modifications regulate transcription, but only recently it was shown that chromatin and histone modifications play a significant role in pre-mRNA splicing. Here we summarize interactions between splicing machinery and chromatin and discuss their potential functional significance. We focus mainly on histone acetylation and methylation and potential mechanisms of their role in splicing. It seems that whereas histone acetylation acts mainly by alterating the transcription rate, histone methylation can also influence splicing directly by recruiting various splicing components.
引用
收藏
页码:182 / 188
页数:7
相关论文
共 121 条
[51]   The differential interaction of snRNPs with pre-mRNA reveals splicing kinetics in living cells [J].
Huranova, Martina ;
Ivani, Ivan ;
Benda, Ales ;
Poser, Ina ;
Brody, Yehuda ;
Hof, Martin ;
Shav-Tal, Yaron ;
Neugebauer, Karla M. ;
Stanek, David .
JOURNAL OF CELL BIOLOGY, 2010, 191 (01) :75-86
[52]   Global impact of RNA polymerase II elongation inhibition on alternative splicing regulation [J].
Ip, Joanna Y. ;
Schmidt, Dominic ;
Pan, Qun ;
Ramani, Arun K. ;
Fraser, Andrew G. ;
Odom, Duncan T. ;
Blencowe, Benjamin J. .
GENOME RESEARCH, 2011, 21 (03) :390-401
[53]  
Jelinic P, 2011, MOL CELL BIOL
[54]   Human U1 snRNA forms a new chromatin-associated snRNP with TAF15 [J].
Jobert, Laure ;
Pinzon, Natalia ;
Van Herreweghe, Elodie ;
Jady, Beata E. ;
Guialis, Apostolia ;
Kiss, Tamas ;
Tora, Laszlo .
EMBO REPORTS, 2009, 10 (05) :494-500
[55]   Eaf3 chromodomain interaction with methylated H3-K36 links histone deacetylation to Pol II elongation [J].
Joshi, AA ;
Struhl, K .
MOLECULAR CELL, 2005, 20 (06) :971-978
[56]   Purification and characterization of native spliceosomes suitable for three-dimensional structural analysis [J].
Jurica, MS ;
Licklider, LJ ;
Gygi, SP ;
Grigorieff, N ;
Moore, MJ .
RNA, 2002, 8 (04) :426-439
[57]   Regulation of alternative splicing by a transcriptional enhancer through RNA pol II elongation [J].
Kadener, S ;
Fededa, JP ;
Rosbash, M ;
Kornblihtt, AR .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2002, 99 (12) :8185-8190
[58]   Antagonistic effects of T-Ag and VP16 reveal a role for RNA pol II elongation on alternative splicing [J].
Kadener, S ;
Cramer, P ;
Nogués, G ;
Cazalla, D ;
de la Mata, M ;
Fededa, JP ;
Werbajh, SE ;
Srebrow, A ;
Kornblihtt, AR .
EMBO JOURNAL, 2001, 20 (20) :5759-5768
[59]   Differential chromatin marking of introns and expressed exons by H3K36me3 [J].
Kolasinska-Zwierz, Paulina ;
Down, Thomas ;
Latorre, Isabel ;
Liu, Tao ;
Liu, X. Shirley ;
Ahringer, Julie .
NATURE GENETICS, 2009, 41 (03) :376-381
[60]   ELECTROPHORETIC SEPARATION OF COMPLEXES INVOLVED IN THE SPLICING OF PRECURSORS TO MESSENGER-RNAS [J].
KONARSKA, MM ;
SHARP, PA .
CELL, 1986, 46 (06) :845-855