Searching for regulatory elements in human noncoding sequences

被引:179
作者
Duret, L [1 ]
Bucher, P [1 ]
机构
[1] INST SUISSE RECH EXPT CANC, CH-1066 EPALINGES, SWITZERLAND
关键词
D O I
10.1016/S0959-440X(97)80058-9
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Important progress has been made in the past two years in the identification of Pol II promoters, For most other regulatory elements, however, current biological knowledge is still insufficient to allow the development of prediction tools. The phylogenetic-footprinting strategy, which is based on the comparative analysis of homologous sequences, is a very efficient approach to identify new unknown regulatory elements. The recent organization of large-scale sequencing projects for some model vertebrate organisms will be extremely valuable for the prediction of regulatory elements in the human genome. (C) Current Biology Ltd.
引用
收藏
页码:399 / 406
页数:8
相关论文
共 48 条
  • [1] [Anonymous], [No title captured]
  • [2] DETECTING CONSERVED REGULATORY ELEMENTS WITH THE MODEL GENOME OF THE JAPANESE PUFFER FISH, FUGU RUBRIPES
    APARICIO, S
    MORRISON, A
    GOULD, A
    GILTHORPE, J
    CHAUDHURI, C
    RIGBY, P
    KRUMLAUF, R
    BRENNER, S
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1995, 92 (05) : 1684 - 1688
  • [3] Phylogenetic footprinting of the human cytochrome c oxidase subunit vb promoter
    Bachman, NJ
    Yang, TL
    Dasen, JS
    Ernst, RE
    Lomax, MI
    [J]. ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS, 1996, 333 (01) : 152 - 162
  • [4] CHEN QK, 1995, COMPUT APPL BIOSCI, V11, P563
  • [5] A 40-BASE-PAIR SEQUENCE IN THE 3' END OF THE BETA-ACTIN GENE REGULATES BETA-ACTIN MESSENGER-RNA TRANSCRIPTION DURING MYOGENESIS
    DEPONTIZILLI, L
    SEILERTUYNS, A
    PATERSON, BM
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1988, 85 (05) : 1389 - 1393
  • [6] STRONG CONSERVATION OF NONCODING SEQUENCES DURING VERTEBRATES EVOLUTION - POTENTIAL INVOLVEMENT IN POSTTRANSCRIPTIONAL REGULATION OF GENE-EXPRESSION
    DURET, L
    DORKELD, F
    GAUTIER, C
    [J]. NUCLEIC ACIDS RESEARCH, 1993, 21 (10) : 2315 - 2322
  • [7] HOVERGEN - A DATABASE OF HOMOLOGOUS VERTEBRATE GENES
    DURET, L
    MOUCHIROUD, D
    GOUY, M
    [J]. NUCLEIC ACIDS RESEARCH, 1994, 22 (12) : 2360 - 2365
  • [8] Hidden Markov models
    Eddy, SR
    [J]. CURRENT OPINION IN STRUCTURAL BIOLOGY, 1996, 6 (03) : 361 - 365
  • [9] Small is beautiful: Comparative genomics with the pufferfish (Fugu rubripes)
    Elgar, G
    Sandford, R
    Aparicio, S
    Macrae, A
    Venkatesh, B
    Brenner, S
    [J]. TRENDS IN GENETICS, 1996, 12 (04) : 145 - 150
  • [10] Finding genes by computer: The state of the art
    Fickett, JW
    [J]. TRENDS IN GENETICS, 1996, 12 (08) : 316 - 320