The Digital MIQE Guidelines: Minimum Information for Publication of Quantitative Digital PCR Experiments

被引:616
作者
Huggett, Jim F. [1 ]
Foy, Carole A. [1 ]
Benes, Vladimir [2 ]
Emslie, Kerry [3 ]
Garson, Jeremy A. [4 ]
Haynes, Ross [5 ]
Hellemans, Jan [6 ]
Kubista, Mikael [7 ]
Mueller, Reinhold D. [8 ]
Nolan, Tania [9 ]
Pfaffl, Michael W. [10 ]
Shipley, Gregory L. [11 ]
Vandesompele, Jo [6 ]
Wittwer, Carl T. [12 ]
Bustin, Stephen A.
机构
[1] LGC, Teddington TW11 0LY, Middx, England
[2] EMBL Heidelberg, Genom Core Facil, Heidelberg, Germany
[3] Natl Measurement Inst, Lindfield, NSW, Australia
[4] UCL, Div Infect & Immun, Res Dept Infect, London, England
[5] NIST, Gaithersburg, MD 20899 USA
[6] Ghent Univ Hosp, CMGG, Ghent, Belgium
[7] Czech Acad Sci, Inst Biotechnol, Gothenburg, Sweden
[8] Sequenom Ctr Mol Med, San Diego, CA USA
[9] Sigma Custom Prod, Haverhill, Suffolk, England
[10] Ctr Life & Food Sci, Weihenstephan, Germany
[11] Shipley Consulting LLC, Houston, TX USA
[12] Univ Utah, Dept Pathol, Salt Lake City, UT USA
关键词
REAL-TIME PCR; POLYMERASE-CHAIN-REACTION; COPY NUMBER VARIATION; RT-PCR; ABSOLUTE QUANTITATION; DNA; QUANTIFICATION; DESIGN; PLATFORM; SYSTEM;
D O I
10.1373/clinchem.2013.206375
中图分类号
R446 [实验室诊断]; R-33 [实验医学、医学实验];
学科分类号
1001 ;
摘要
There is growing interest in digital PCR (dPCR) because technological progress makes it a practical and increasingly affordable technology. dPCR allows the precise quantification of nucleic acids, facilitating the measurement of small percentage differences and quantification of rare variants. dPCR may also be more reproducible and less susceptible to inhibition than quantitative real-time PCR (qPCR). Consequently, dPCR has the potential to have a substantial impact on research as well as diagnostic applications. However, as with qPCR, the ability to perform robust meaningful experiments requires careful design and adequate controls. To assist independent evaluation of experimental data, comprehensive disclosure of all relevant experimental details is required. To facilitate this process we present the Minimum Information for Publication of Quantitative Digital PCR Experiments guidelines. This report addresses known requirements for dPCR that have already been identified during this early stage of its development and commercial implementation. Adoption of these guidelines by the scientific community will help to standardize experimental protocols, maximize efficient utilization of resources, and enhance the impact of this promising new technology. (c) 2013 American Association for Clinical Chemistry
引用
收藏
页码:892 / 902
页数:11
相关论文
共 47 条
  • [11] Application of next generation qPCR and sequencing platforms to mRNA biomarker analysis
    Devonshire, Alison S.
    Sanders, Rebecca
    Wilkes, Timothy M.
    Taylor, Martin S.
    Foy, Carole A.
    Huggett, Jim F.
    [J]. METHODS, 2013, 59 (01) : 89 - 100
  • [12] Mathematical Analysis of Copy Number Variation in a DNA Sample Using Digital PCR on a Nanofluidic Device
    Dube, Simant
    Qin, Jian
    Ramakrishnan, Ramesh
    [J]. PLOS ONE, 2008, 3 (08):
  • [13] 1-Million droplet array with wide-field fluorescence imaging for digital PCR
    Hatch, Andrew C.
    Fisher, Jeffrey S.
    Tovar, Armando R.
    Hsieh, Albert T.
    Lin, Robert
    Pentoney, Stephen L.
    Yang, David L.
    Lee, Abraham P.
    [J]. LAB ON A CHIP, 2011, 11 (22) : 3838 - 3845
  • [14] Low-level detection and quantitation of cellular HIV-1 DNA and 2-LTR circles using droplet digital PCR
    Henrich, Timothy J.
    Gallien, Sebastien
    Li, Jonathan Z.
    Pereyra, Florencia
    Kuritzkes, Daniel R.
    [J]. JOURNAL OF VIROLOGICAL METHODS, 2012, 186 (1-2) : 68 - 72
  • [15] Heyries KA, 2011, NAT METHODS, V8, P649, DOI [10.1038/NMETH.1640, 10.1038/nmeth.1640]
  • [16] High-Throughput Droplet Digital PCR System for Absolute Quantitation of DNA Copy Number
    Hindson, Benjamin J.
    Ness, Kevin D.
    Masquelier, Donald A.
    Belgrader, Phillip
    Heredia, Nicholas J.
    Makarewicz, Anthony J.
    Bright, Isaac J.
    Lucero, Michael Y.
    Hiddessen, Amy L.
    Legler, Tina C.
    Kitano, Tyler K.
    Hodel, Michael R.
    Petersen, Jonathan F.
    Wyatt, Paul W.
    Steenblock, Erin R.
    Shah, Pallavi H.
    Bousse, Luc J.
    Troup, Camille B.
    Mellen, Jeffrey C.
    Wittmann, Dean K.
    Erndt, Nicholas G.
    Cauley, Thomas H.
    Koehler, Ryan T.
    So, Austin P.
    Dube, Simant
    Rose, Klint A.
    Montesclaros, Luz
    Wang, Shenglong
    Stumbo, David P.
    Hodges, Shawn P.
    Romine, Steven
    Milanovich, Fred P.
    White, Helen E.
    Regan, John F.
    Karlin-Neumann, George A.
    Hindson, Christopher M.
    Saxonov, Serge
    Colston, Bill W.
    [J]. ANALYTICAL CHEMISTRY, 2011, 83 (22) : 8604 - 8610
  • [17] Molecular quantification of environmental DNA using microfluidics and digital PCR
    Hoshino, Tatsuhiko
    Inagaki, Fumio
    [J]. SYSTEMATIC AND APPLIED MICROBIOLOGY, 2012, 35 (06) : 390 - 395
  • [18] Differential susceptibility of PCR reactions to inhibitors: An important and unrecognised phenomenon
    Huggett J.F.
    Novak T.
    Garson J.A.
    Green C.
    Morris-Jones S.D.
    Miller R.F.
    Zumla A.
    [J]. BMC Research Notes, 1 (1)
  • [19] JCGM, 2012, INT VOC METR BAS GEN
  • [20] Theoretical Design and Analysis of Multivolume Digital Assays with Wide Dynamic Range Validated Experimentally with Microfluidic Digital PCR
    Kreutz, Jason E.
    Munson, Todd
    Huynh, Toan
    Shen, Feng
    Du, Wenbin
    Ismagilov, Rustem F.
    [J]. ANALYTICAL CHEMISTRY, 2011, 83 (21) : 8158 - 8168