CASA: a server for the critical assessment of protein sequence alignment accuracy

被引：3

作者：

Kahsay, RY

Wan, GL

Dongre, N

Gao, G

Dunbrack, RL

机构：

[1] Fox Chase Canc Ctr, Inst Canc Res, Philadelphia, PA 19111 USA

[2] Univ Delaware, Delaware Biotechnol Inst, Newark, DE 19711 USA

[3] Univ Delaware, Dept Elect & Comp Engn, Newark, DE 19711 USA

来源：

BIOINFORMATICS | 2002年 / 18卷 / 03期

关键词：

D O I：

10.1093/bioinformatics/18.3.496

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

A public server for evaluating the accuracy of protein sequence alignment methods is presented. CASA is an implementation of the alignment accuracy benchmark presented by Sauder et al. (Proteins, 40, 6-22, 2000). The benchmark currently contains 39321 pairwise protein structure alignments produced with the CE program from SCOP domain definitions. The server produces graphical and tabular comparisons of the accuracy of a user's input sequence alignments with other commonly used programs, such as BLAST PSI-BLAST Clustal W, and SAM-T99.

引用

页码：496 / 497

页数：2

共 11 条

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