DFT study of α- and β-D-galactopyranose at the B3LYP/6-311++G** level of theory

被引:60
作者
Momany, FA
Appell, M
Willett, JL
Schnupf, U
Bosma, WB
机构
[1] USDA ARS, Natl Ctr Agr Utilizat Res, Plant Polymer Res, Peoria, IL 61604 USA
[2] USDA ARS, Natl Ctr Agr Utilizat Res, Mycotoxin Res, Peoria, IL 61604 USA
[3] Bradley Univ, Dept Biochem & Chem, Peoria, IL 61625 USA
关键词
B3LYP/6-311++G**; galactose; chair; skew-boat; conformation; Hessian; relative free energy;
D O I
10.1016/j.carres.2005.12.006
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Forty-one conformations of alpha- and beta-(D)-galactopyranose were geometry optimized using the B3LYP density functional and 6-311 double dagger double dagger G** basis set. Full geometry optimization was performed on different ring geometries and different hydroxymethyl rotamers (gg/gt/tg). Analytically derived Hessians were used to calculate zero point energy, enthalpy, and entropy. The lowest energy and free-energy conformation found is the alpha-gg-C-4(1)-c chair conformation, which is of lower electronic and free energy than the lowest energy alpha-D-glucopyranose conformer because of favorable hydrogen-bonding interactions. The in vacuo calculations showed considerable (similar to 2.2 kcal/mol) energetic preference for the alpha over the beta anomer for galactopyranose in both the C-4(1) and C-1(4) chair conformations. Results are compared to glucopyranose and mannopyranose calculations in vacuo. Boat and skew-boat forms were found that remained stable upon gradient optimization, although many starting conformations moved to other boat forms upon optimization. As with glucopyranose and mannopyranose, the orientation and interaction of the hydroxyl groups make the most significant contributions to the conformation-energy relationship in vacuo. (c) 2005 Elsevier Ltd. All rights reserved.
引用
收藏
页码:525 / 537
页数:13
相关论文
共 38 条
[21]  
2-F
[22]   Computational studies on carbohydrates:: in vacuo studies using a revised AMBER force field, AMB99C, designed for α-(1→4) linkages [J].
Momany, FA ;
Willett, JL .
CARBOHYDRATE RESEARCH, 2000, 326 (03) :194-209
[23]   Computational studies on carbohydrates: solvation studies on maltose and cyclomaltooligosaccharides (cyclodextrins) using a DFT/ab initio-derived empirical force field, AMB99C [J].
Momany, FA ;
Willett, JL .
CARBOHYDRATE RESEARCH, 2000, 326 (03) :210-226
[24]   B3LYP/6-311++G** geometry-optimization study of pentahydrates of α- and β-d-glucopyranose [J].
Momany, FA ;
Appell, M ;
Willett, JL ;
Bosma, WB .
CARBOHYDRATE RESEARCH, 2005, 340 (09) :1638-1655
[25]   B3LYP/6-311++G** study of monohydrates of α- and β-D-glucopyranose:: hydrogen bonding, stress energies, and effect of hydration on internal coordinates [J].
Momany, FA ;
Appell, M ;
Strati, G ;
Willett, JL .
CARBOHYDRATE RESEARCH, 2004, 339 (03) :553-567
[26]   H-1-NMR STUDIES OF (6R)-DEUTERATED AND (6S)-DEUTERATED D-HEXOSES - ASSIGNMENT OF THE PREFERRED ROTAMERS ABOUT C5-C6 BOND OF D-GLUCOSE AND D-GALACTOSE DERIVATIVES IN SOLUTIONS [J].
NISHIDA, Y ;
OHRUI, H ;
MEGURO, H .
TETRAHEDRON LETTERS, 1984, 25 (15) :1575-1578
[27]   CRYSTAL-STRUCTURE OF ALPHA-D-GALACTOSE [J].
OHANESSIAN, J ;
GILLIERPANDRAUD, H .
ACTA CRYSTALLOGRAPHICA SECTION B-STRUCTURAL SCIENCE, 1976, 32 (OCT15) :2810-2813
[28]   Structures and energies of D-galactose and galabiose conformers as calculated by ab initio and semiempirical methods [J].
Rahal-Sekkal, M ;
Sekkal, N ;
Kleb, DC ;
Bleckmann, P .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 2003, 24 (07) :806-818
[29]  
Rao V. S. R., 1998, CONFORMATION CARBOHY, P56
[30]   Conformation of the galactose ring adopted in solution and in crystalline form as determined by experimental and DFT 1H NMR and single-crystal X-ray analysis [J].
Roslund, MU ;
Klika, KD ;
Lehtilä, RL ;
Tähtinen, P ;
Sillanpää, R ;
Leino, R .
JOURNAL OF ORGANIC CHEMISTRY, 2004, 69 (01) :18-25