The ensembl core software libraries

被引：83

作者：

Stabenau, A

McVicker, G

Melsopp, C

Proctor, G

Clamp, M

Birney, E

机构：

[1] EMBL European Bioinformat Inst, Hinxton CB10 1SD, England

[2] Broad Inst, Cambridge, MA 02141 USA

来源：

GENOME RESEARCH | 2004年 / 14卷 / 05期

基金：

英国惠康基金;

关键词：

D O I：

10.1101/gr.1857204

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

Systems for managing genomic data must store a Vast quantity of information. Ensembl stores these data in several MySQL databases. The core software libraries provide a practical and effective means for programmers to access these data. By encapsulating the underlying database structure, the libraries present end users with a simple, abstract interface to a complex data model. Programs that use the libraries rather than SQL to access the data are unaffected by most schema changes. The architecture of the core software libraries, the schema, and the factors influencing their design are described. All code and data are freely available.

引用

页码：929 / 933

页数：5

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