Structural systems biology: modelling protein interactions

被引:245
作者
Aloy, P
Russell, RB
机构
[1] European Mol Biol Lab, D-69117 Heidelberg, Germany
[2] ICREA, Barcelona 08028, Spain
[3] IRB, Barcelona 08028, Spain
关键词
D O I
10.1038/nrm1859
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
Much of systems biology aims to predict the behaviour of biological systems on the basis of the set of molecules involved. Understanding the interactions between these molecules is therefore crucial to such efforts. Although many thousands of interactions are known, precise molecular details are available for only a tiny fraction of them. The difficulties that are involved in experimentally determining atomic structures for interacting proteins make predictive methods essential for progress. Structural details can ultimately turn abstract system representations into models that more accurately reflect biological reality.
引用
收藏
页码:188 / 197
页数:10
相关论文
共 103 条
  • [91] One-step analysis of protein complexes in microliters of cell lysate
    Stoevesandt, O
    Köhler, K
    Fischer, R
    Johnston, ICD
    Brock, R
    [J]. NATURE METHODS, 2005, 2 (11) : 833 - 835
  • [92] A modular polycistronic expression system for overexpressing protein complexes in Escherichia coli
    Tan, S
    [J]. PROTEIN EXPRESSION AND PURIFICATION, 2001, 21 (01) : 224 - 234
  • [93] MIPS bacterial genomes functional annotation benchmark dataset
    Tetko, IV
    Brauner, B
    Dunger-Kaltenbach, I
    Frishman, G
    Montrone, C
    Fobo, G
    Ruepp, A
    Antonov, AV
    Surmeli, D
    Mewes, HW
    [J]. BIOINFORMATICS, 2005, 21 (10) : 2520 - 2521
  • [94] A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae
    Uetz, P
    Giot, L
    Cagney, G
    Mansfield, TA
    Judson, RS
    Knight, JR
    Lockshon, D
    Narayan, V
    Srinivasan, M
    Pochart, P
    Qureshi-Emili, A
    Li, Y
    Godwin, B
    Conover, D
    Kalbfleisch, T
    Vijayadamodar, G
    Yang, MJ
    Johnston, M
    Fields, S
    Rothberg, JM
    [J]. NATURE, 2000, 403 (6770) : 623 - 627
  • [95] Comparative assessment of large-scale data sets of protein-protein interactions
    von Mering, C
    Krause, R
    Snel, B
    Cornell, M
    Oliver, SG
    Fields, S
    Bork, P
    [J]. NATURE, 2002, 417 (6887) : 399 - 403
  • [96] STRING: known and predicted protein-protein associations, integrated and transferred across organisms
    von Mering, C
    Jensen, LJ
    Snel, B
    Hooper, SD
    Krupp, M
    Foglierini, M
    Jouffre, N
    Huynen, MA
    Bork, P
    [J]. NUCLEIC ACIDS RESEARCH, 2005, 33 : D433 - D437
  • [97] Prediction of protein-protein interactions:: the CAPRI experiment, its evaluation and implications
    Wodak, SJ
    Méndez, R
    [J]. CURRENT OPINION IN STRUCTURAL BIOLOGY, 2004, 14 (02) : 242 - 249
  • [98] WOJCIK J, 2001, BIOINFORMATICS S1, V17, P296
  • [99] DIP, the Database of Interacting Proteins:: a research tool for studying cellular networks of protein interactions
    Xenarios, I
    Salwínski, L
    Duan, XQJ
    Higney, P
    Kim, SM
    Eisenberg, D
    [J]. NUCLEIC ACIDS RESEARCH, 2002, 30 (01) : 303 - 305
  • [100] Structural basis by which alternative splicing confers specificity in fibroblast growth factor receptors
    Yeh, BK
    Igarashi, M
    Eliseenkova, AV
    Plotnikov, AN
    Sher, I
    Ron, D
    Aaronson, SA
    Mohammadi, M
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2003, 100 (05) : 2266 - 2271