Signal amplification by rolling circle amplification on DNA microarrays

被引:156
作者
Nallur, G [1 ]
Luo, CH [1 ]
Fang, LH [1 ]
Cooley, S [1 ]
Dave, V [1 ]
Lambert, J [1 ]
Kukanskis, K [1 ]
Kingsmore, S [1 ]
Lasken, R [1 ]
Schweitzer, B [1 ]
机构
[1] Mol Staging Inc, New Haven, CT 06511 USA
关键词
D O I
10.1093/nar/29.23.e118
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
While microarrays hold considerable promise in large-scale biology on account of their massively parallel analytical nature, there is a need for compatible signal amplification procedures to increase sensitivity without loss of multiplexing. Rolling circle amplification (RCA) is a molecular amplification method with the unique property of product localization. This report describes the application of RCA signal amplification for multiplexed, direct detection and quantitation of nucleic acid targets on planar glass and gel-coated microarrays. As few as 150 molecules bound to the surface of microarrays can be detected using RCA. Because of the linear kinetics of RCA, nucleic acid target molecules may be measured with a dynamic range of four orders of magnitude. Consequently, RCA is a promising technology for the direct measurement of nucleic acids on microarrays without the need for a potentially biasing preamplification step.
引用
收藏
页码:art. no. / e118
页数:9
相关论文
共 16 条
[1]   Protein microchips: Use for immunoassay and enzymatic reactions [J].
Arenkov, P ;
Kukhtin, A ;
Gemmell, A ;
Voloshchuk, S ;
Chupeeva, V ;
Mirzabekov, A .
ANALYTICAL BIOCHEMISTRY, 2000, 278 (02) :123-131
[2]   Sequencing by hybridization with the generic 6-mer oligonucleotide microarray: An advanced scheme for data processing [J].
Chechetkin, VR ;
Turygin, AY ;
Proudnikov, DY ;
Prokopenko, DV ;
Kirillov, EV ;
Mirzabekov, AD .
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2000, 18 (01) :83-101
[3]   Expression profiling using cDNA microarrays [J].
Duggan, DJ ;
Bittner, M ;
Chen, YD ;
Meltzer, P ;
Trent, JM .
NATURE GENETICS, 1999, 21 (Suppl 1) :10-14
[4]  
EDWARDS MC, 1994, PCR METH APPL, V3, pS65
[5]   Universal DNA microarray method for multiplex detection of low abundance point mutations [J].
Gerry, NP ;
Witowski, NE ;
Day, J ;
Hammer, RP ;
Barany, G ;
Barany, F .
JOURNAL OF MOLECULAR BIOLOGY, 1999, 292 (02) :251-262
[6]   Manual manufacturing of oligonucleotide, DNA, and protein microchips [J].
Guschin, D ;
Yershov, G ;
Zaslavsky, A ;
Gemmell, A ;
Shick, V ;
Proudnikov, D ;
Arenkov, P ;
Mirzabekov, A .
ANALYTICAL BIOCHEMISTRY, 1997, 250 (02) :203-211
[7]   Resequencing and mutational analysis using oligonucleotide microarrays [J].
Hacia, JG .
NATURE GENETICS, 1999, 21 (Suppl 1) :42-47
[8]   Fidelity of DNA ligation: a novel experimental approach based on the polymerisation of libraries of oligonucleotides [J].
Housby, JN ;
Southern, EM .
NUCLEIC ACIDS RESEARCH, 1998, 26 (18) :4259-4266
[9]   Coordinated leading and lagging strand DNA synthesis on a minicircular template [J].
Lee, J ;
Chastain, PD ;
Kusakabe, T ;
Griffith, JD ;
Richardson, CC .
MOLECULAR CELL, 1998, 1 (07) :1001-1010
[10]   Mutation detection and single-molecule counting using isothermal rolling-circle amplification [J].
Lizardi, PM ;
Huang, XH ;
Zhu, ZR ;
Bray-Ward, P ;
Thomas, DC ;
Ward, DC .
NATURE GENETICS, 1998, 19 (03) :225-232