Classification and Comparison of Small RNAs from Plants
被引:627
作者:
Axtell, Michael J.
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机构:
Penn State Univ, Dept Biol, University Pk, PA 16802 USA
Penn State Univ, Huck Inst Life Sci, University Pk, PA 16802 USAPenn State Univ, Dept Biol, University Pk, PA 16802 USA
Axtell, Michael J.
[1
,2
]
机构:
[1] Penn State Univ, Dept Biol, University Pk, PA 16802 USA
[2] Penn State Univ, Huck Inst Life Sci, University Pk, PA 16802 USA
Regulatory small RNAs, which range in size from 20 to 24 nucleotides, are ubiquitous components of endogenous plant transcriptomes, as well as common responses to exogenous viral infections and introduced double-stranded RNA (dsRNA). Endogenous small RNAs derive from the processing of helical RNA precursors and can be categorized into several groups based on differences in biogenesis and function. A major distinction can be observed between small RNAs derived from single-stranded precursors with a hairpin structure [referred to here as hairpin RNAs (hpRNAs)] and those derived from dsRNA precursors [small interfering RNAs (siRNAs)]. hpRNAs in plants can be divided into two secondary groups: microRNAs and those that are not microRNAs. The currently known siRNAs fall mostly into one of three secondary groups: heterochromatic siRNAs, secondary siRNAs, and natural antisense transcript siRNAs. Tertiary subdivisions can be identified within many of the secondary classifications as well. Comparisons between the different classes of plant small RNAs help to illuminate key goals for future research.
机构:
Fred Hutchinson Canc Res Ctr, Howard Hughes Med Inst, Seattle, WA 98109 USAFred Hutchinson Canc Res Ctr, Howard Hughes Med Inst, Seattle, WA 98109 USA
Gehring, Mary
;
Bubb, Kerry L.
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机构:
Fred Hutchinson Canc Res Ctr, Howard Hughes Med Inst, Seattle, WA 98109 USAFred Hutchinson Canc Res Ctr, Howard Hughes Med Inst, Seattle, WA 98109 USA
Bubb, Kerry L.
;
Henikoff, Steven
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h-index: 0
机构:
Fred Hutchinson Canc Res Ctr, Howard Hughes Med Inst, Seattle, WA 98109 USAFred Hutchinson Canc Res Ctr, Howard Hughes Med Inst, Seattle, WA 98109 USA
机构:
Whitehead Inst Biomed Res, Cambridge, MA 02142 USA
MIT, Howard Hughes Med Inst, Cambridge, MA 02139 USA
MIT, Dept Biol, Cambridge, MA 02139 USAWhitehead Inst Biomed Res, Cambridge, MA 02142 USA
Guo, Huili
;
Ingolia, Nicholas T.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif San Francisco, Howard Hughes Med Inst, San Francisco, CA 94158 USA
Univ Calif San Francisco, Dept Cellular & Mol Pharmacol, San Francisco, CA 94158 USA
Calif Inst Quantitat Biosci, San Francisco, CA 94158 USAWhitehead Inst Biomed Res, Cambridge, MA 02142 USA
Ingolia, Nicholas T.
;
Weissman, Jonathan S.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif San Francisco, Howard Hughes Med Inst, San Francisco, CA 94158 USA
Univ Calif San Francisco, Dept Cellular & Mol Pharmacol, San Francisco, CA 94158 USA
Calif Inst Quantitat Biosci, San Francisco, CA 94158 USAWhitehead Inst Biomed Res, Cambridge, MA 02142 USA
Weissman, Jonathan S.
;
Bartel, David P.
论文数: 0引用数: 0
h-index: 0
机构:
Whitehead Inst Biomed Res, Cambridge, MA 02142 USA
MIT, Howard Hughes Med Inst, Cambridge, MA 02139 USA
MIT, Dept Biol, Cambridge, MA 02139 USAWhitehead Inst Biomed Res, Cambridge, MA 02142 USA
机构:Univ Calif Los Angeles, Dept Mol Cell & Dev Biol, Los Angeles, CA 90095 USA
Henderson, Ian R.
;
Zhang, Xiaoyu
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h-index: 0
机构:Univ Calif Los Angeles, Dept Mol Cell & Dev Biol, Los Angeles, CA 90095 USA
Zhang, Xiaoyu
;
Lu, Cheng
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h-index: 0
机构:Univ Calif Los Angeles, Dept Mol Cell & Dev Biol, Los Angeles, CA 90095 USA
Lu, Cheng
;
Johnson, Lianna
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机构:Univ Calif Los Angeles, Dept Mol Cell & Dev Biol, Los Angeles, CA 90095 USA
Johnson, Lianna
;
Meyers, Blake C.
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机构:Univ Calif Los Angeles, Dept Mol Cell & Dev Biol, Los Angeles, CA 90095 USA
Meyers, Blake C.
;
Green, Pamela J.
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机构:Univ Calif Los Angeles, Dept Mol Cell & Dev Biol, Los Angeles, CA 90095 USA
Green, Pamela J.
;
Jacobsen, Steven E.
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机构:
Univ Calif Los Angeles, Dept Mol Cell & Dev Biol, Los Angeles, CA 90095 USAUniv Calif Los Angeles, Dept Mol Cell & Dev Biol, Los Angeles, CA 90095 USA
机构:Oregon State Univ, Dept Bot & Plant Pathol, Ctr Genome Res & Biocomp, Corvallis, OR 97331 USA
Howell, Miya D.
;
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Fahlgren, Noah
;
Chapman, Elisabeth J.
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h-index: 0
机构:Oregon State Univ, Dept Bot & Plant Pathol, Ctr Genome Res & Biocomp, Corvallis, OR 97331 USA
Chapman, Elisabeth J.
;
Cumbie, Jason S.
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h-index: 0
机构:Oregon State Univ, Dept Bot & Plant Pathol, Ctr Genome Res & Biocomp, Corvallis, OR 97331 USA
Cumbie, Jason S.
;
Sullivan, Christopher M.
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机构:Oregon State Univ, Dept Bot & Plant Pathol, Ctr Genome Res & Biocomp, Corvallis, OR 97331 USA
Sullivan, Christopher M.
;
Givan, Scott A.
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机构:Oregon State Univ, Dept Bot & Plant Pathol, Ctr Genome Res & Biocomp, Corvallis, OR 97331 USA
Givan, Scott A.
;
Kasschau, Kristin D.
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机构:Oregon State Univ, Dept Bot & Plant Pathol, Ctr Genome Res & Biocomp, Corvallis, OR 97331 USA
Kasschau, Kristin D.
;
Carrington, James C.
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h-index: 0
机构:
Oregon State Univ, Dept Bot & Plant Pathol, Ctr Genome Res & Biocomp, Corvallis, OR 97331 USAOregon State Univ, Dept Bot & Plant Pathol, Ctr Genome Res & Biocomp, Corvallis, OR 97331 USA
机构:
Fred Hutchinson Canc Res Ctr, Howard Hughes Med Inst, Seattle, WA 98109 USAFred Hutchinson Canc Res Ctr, Howard Hughes Med Inst, Seattle, WA 98109 USA
Gehring, Mary
;
Bubb, Kerry L.
论文数: 0引用数: 0
h-index: 0
机构:
Fred Hutchinson Canc Res Ctr, Howard Hughes Med Inst, Seattle, WA 98109 USAFred Hutchinson Canc Res Ctr, Howard Hughes Med Inst, Seattle, WA 98109 USA
Bubb, Kerry L.
;
Henikoff, Steven
论文数: 0引用数: 0
h-index: 0
机构:
Fred Hutchinson Canc Res Ctr, Howard Hughes Med Inst, Seattle, WA 98109 USAFred Hutchinson Canc Res Ctr, Howard Hughes Med Inst, Seattle, WA 98109 USA
机构:
Whitehead Inst Biomed Res, Cambridge, MA 02142 USA
MIT, Howard Hughes Med Inst, Cambridge, MA 02139 USA
MIT, Dept Biol, Cambridge, MA 02139 USAWhitehead Inst Biomed Res, Cambridge, MA 02142 USA
Guo, Huili
;
Ingolia, Nicholas T.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif San Francisco, Howard Hughes Med Inst, San Francisco, CA 94158 USA
Univ Calif San Francisco, Dept Cellular & Mol Pharmacol, San Francisco, CA 94158 USA
Calif Inst Quantitat Biosci, San Francisco, CA 94158 USAWhitehead Inst Biomed Res, Cambridge, MA 02142 USA
Ingolia, Nicholas T.
;
Weissman, Jonathan S.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Calif San Francisco, Howard Hughes Med Inst, San Francisco, CA 94158 USA
Univ Calif San Francisco, Dept Cellular & Mol Pharmacol, San Francisco, CA 94158 USA
Calif Inst Quantitat Biosci, San Francisco, CA 94158 USAWhitehead Inst Biomed Res, Cambridge, MA 02142 USA
Weissman, Jonathan S.
;
Bartel, David P.
论文数: 0引用数: 0
h-index: 0
机构:
Whitehead Inst Biomed Res, Cambridge, MA 02142 USA
MIT, Howard Hughes Med Inst, Cambridge, MA 02139 USA
MIT, Dept Biol, Cambridge, MA 02139 USAWhitehead Inst Biomed Res, Cambridge, MA 02142 USA
机构:Univ Calif Los Angeles, Dept Mol Cell & Dev Biol, Los Angeles, CA 90095 USA
Henderson, Ian R.
;
Zhang, Xiaoyu
论文数: 0引用数: 0
h-index: 0
机构:Univ Calif Los Angeles, Dept Mol Cell & Dev Biol, Los Angeles, CA 90095 USA
Zhang, Xiaoyu
;
Lu, Cheng
论文数: 0引用数: 0
h-index: 0
机构:Univ Calif Los Angeles, Dept Mol Cell & Dev Biol, Los Angeles, CA 90095 USA
Lu, Cheng
;
Johnson, Lianna
论文数: 0引用数: 0
h-index: 0
机构:Univ Calif Los Angeles, Dept Mol Cell & Dev Biol, Los Angeles, CA 90095 USA
Johnson, Lianna
;
Meyers, Blake C.
论文数: 0引用数: 0
h-index: 0
机构:Univ Calif Los Angeles, Dept Mol Cell & Dev Biol, Los Angeles, CA 90095 USA
Meyers, Blake C.
;
Green, Pamela J.
论文数: 0引用数: 0
h-index: 0
机构:Univ Calif Los Angeles, Dept Mol Cell & Dev Biol, Los Angeles, CA 90095 USA
Green, Pamela J.
;
Jacobsen, Steven E.
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h-index: 0
机构:
Univ Calif Los Angeles, Dept Mol Cell & Dev Biol, Los Angeles, CA 90095 USAUniv Calif Los Angeles, Dept Mol Cell & Dev Biol, Los Angeles, CA 90095 USA
机构:Oregon State Univ, Dept Bot & Plant Pathol, Ctr Genome Res & Biocomp, Corvallis, OR 97331 USA
Howell, Miya D.
;
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h-index:
机构:
Fahlgren, Noah
;
Chapman, Elisabeth J.
论文数: 0引用数: 0
h-index: 0
机构:Oregon State Univ, Dept Bot & Plant Pathol, Ctr Genome Res & Biocomp, Corvallis, OR 97331 USA
Chapman, Elisabeth J.
;
Cumbie, Jason S.
论文数: 0引用数: 0
h-index: 0
机构:Oregon State Univ, Dept Bot & Plant Pathol, Ctr Genome Res & Biocomp, Corvallis, OR 97331 USA
Cumbie, Jason S.
;
Sullivan, Christopher M.
论文数: 0引用数: 0
h-index: 0
机构:Oregon State Univ, Dept Bot & Plant Pathol, Ctr Genome Res & Biocomp, Corvallis, OR 97331 USA
Sullivan, Christopher M.
;
Givan, Scott A.
论文数: 0引用数: 0
h-index: 0
机构:Oregon State Univ, Dept Bot & Plant Pathol, Ctr Genome Res & Biocomp, Corvallis, OR 97331 USA
Givan, Scott A.
;
Kasschau, Kristin D.
论文数: 0引用数: 0
h-index: 0
机构:Oregon State Univ, Dept Bot & Plant Pathol, Ctr Genome Res & Biocomp, Corvallis, OR 97331 USA
Kasschau, Kristin D.
;
Carrington, James C.
论文数: 0引用数: 0
h-index: 0
机构:
Oregon State Univ, Dept Bot & Plant Pathol, Ctr Genome Res & Biocomp, Corvallis, OR 97331 USAOregon State Univ, Dept Bot & Plant Pathol, Ctr Genome Res & Biocomp, Corvallis, OR 97331 USA