Effects of abiotic stress on plants: a systems biology perspective

被引:798
作者
Cramer, Grant R. [1 ]
Urano, Kaoru [2 ]
Delrot, Serge [3 ]
Pezzotti, Mario [4 ]
Shinozaki, Kazuo [2 ]
机构
[1] Univ Nevada, Dept Biochem & Mol Biol, Reno, NV 89557 USA
[2] RIKEN Plant Sci Ctr, Gene Discovery Res Grp, Tsukuba, Ibaraki 3050074, Japan
[3] Univ Bordeaux, ISVV, UMR 1287, F-33882 Villenave Dornon, France
[4] Univ Verona, Dipartimento Biotecnol, I-37134 Verona, Italy
来源
BMC PLANT BIOLOGY | 2011年 / 11卷
基金
美国国家科学基金会;
关键词
MODEL DATA-ANALYSIS; ABSCISIC-ACID; TRANSCRIPTION FACTOR; WATER-DEFICIT; PROTEIN-SYNTHESIS; GENE-EXPRESSION; DROUGHT STRESS; POLY(ADP-RIBOSE) POLYMERASE; SNF1-RELATED KINASE; FUNCTIONAL-ANALYSIS;
D O I
10.1186/1471-2229-11-163
中图分类号
Q94 [植物学];
学科分类号
071001 ;
摘要
The natural environment for plants is composed of a complex set of abiotic stresses and biotic stresses. Plant responses to these stresses are equally complex. Systems biology approaches facilitate a multi-targeted approach by allowing one to identify regulatory hubs in complex networks. Systems biology takes the molecular parts (transcripts, proteins and metabolites) of an organism and attempts to fit them into functional networks or models designed to describe and predict the dynamic activities of that organism in different environments. In this review, research progress in plant responses to abiotic stresses is summarized from the physiological level to the molecular level. New insights obtained from the integration of omics datasets are highlighted. Gaps in our knowledge are identified, providing additional focus areas for crop improvement research in the future.
引用
收藏
页数:14
相关论文
共 135 条
[1]  
Arenas-Huertero F, 2000, GENE DEV, V14, P2085
[2]   Multilevel Analysis of Primary Metabolism Provides New Insights into the Role of Potassium Nutrition for Glycolysis and Nitrogen Assimilation in Arabidopsis Roots [J].
Armengaud, Patrick ;
Sulpice, Ronan ;
Miller, Anthony J. ;
Stitt, Mark ;
Amtmann, Anna ;
Gibon, Yves .
PLANT PHYSIOLOGY, 2009, 150 (02) :772-785
[3]   CyClus3D: a Cytoscape plugin for clustering network motifs in integrated networks [J].
Audenaert, Pieter ;
Van Parys, Thomas ;
Brondel, Florian ;
Pickavet, Mario ;
Demeester, Piet ;
Van de Peer, Yves ;
Michoel, Tom .
BIOINFORMATICS, 2011, 27 (11) :1587-1588
[4]   Convergent energy and stress signaling [J].
Baena-Gonzalez, Elena ;
Sheen, Jen .
TRENDS IN PLANT SCIENCE, 2008, 13 (09) :474-482
[5]   A central integrator of transcription networks in plant stress and energy signalling [J].
Baena-Gonzalez, Elena ;
Rolland, Filip ;
Thevelein, Johan M. ;
Sheen, Jen .
NATURE, 2007, 448 (7156) :938-U10
[6]   Autonomy of cell proliferation and developmental programs during Arabidopsis aboveground organ morphogenesis [J].
Bemis, Shannon M. ;
Torii, Keiko U. .
DEVELOPMENTAL BIOLOGY, 2007, 304 (01) :367-381
[7]   WATER AND SALT STRESSES KINETIN AND PROTEIN SYNTHESIS IN TOBACCO LEAVES [J].
BENZIONI, A ;
ITAI, C ;
VAADIA, Y .
PLANT PHYSIOLOGY, 1967, 42 (03) :361-&
[8]   Quantitative transcriptomic analysis of abscisic acid-induced and reactive oxygen species-dependent expression changes and proteomic profiling in Arabidopsis suspension cells [J].
Boehmer, Maik ;
Schroeder, Julian I. .
PLANT JOURNAL, 2011, 67 (01) :105-118
[9]   Stimulus-induced downregulation of root water transport involves reactive oxygen species-activated cell signalling and plasma membrane intrinsic protein internalization [J].
Boursiac, Yann ;
Boudet, Julie ;
Postaire, Olivier ;
Luu, Doan-Trung ;
Tournaire-Roux, Colette ;
Maurel, Christophe .
PLANT JOURNAL, 2008, 56 (02) :207-218
[10]   Cell wall biosynthesis and the molecular mechanism of plant enlargement [J].
Boyer, John S. .
FUNCTIONAL PLANT BIOLOGY, 2009, 36 (05) :383-394