5S ribosomal RNA database

被引：139

作者：

Szymanski, M

Barciszewska, MZ

Erdmann, VA

Barciszewski, J

机构：

[1] Polish Acad Sci, Inst Bioorgan Chem, PL-61704 Poznan, Poland

[2] Free Univ Berlin, Inst Chem, D-14195 Berlin, Germany

来源：

NUCLEIC ACIDS RESEARCH | 2002年 / 30卷 / 01期

关键词：

D O I：

10.1093/nar/30.1.176

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

Ribosomal 5S RNA (5S rRNA) is an integral component of the large ribosomal subunit in all known organisms with the exception only of mitochondrial ribosomes of fungi and animals. It is thought to enhance protein synthesis by stabilization of a ribosome structure. This paper presents the updated database of 5S rRNA and their genes (5S rDNA). Its short characteristics are presented in the Introduction. The database contains 2280 primary structures of 5S rRNA and 5S rRNA genes. These include 536 eubacterial, 61 archaebacterial, 1611 eukaryotic and 72 organelle sequences. The database is available on line through the World Wide Web at http://biobases.ibch.poznan.pl/5SData/.

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页码：176 / 178

页数：3

相关论文

共 13 条

[1] The complete atomic structure of the large ribosomal subunit at 2.4 Å resolution [J].

Ban, N ;

Nissen, P ;

Hansen, J ;

Moore, PB ;

Steitz, TA .

SCIENCE, 2000, 289 (5481) :905-920

[2] COMPILATION OF PLANT 5S RIBOSOMAL-RNA SEQUENCES ON RNA AND DNA LEVELS [J].

BARCISZEWSKA, MZ ;

SZYMANSKI, M ;

SPECHT, T ;

ERDMANN, VA ;

BARCISZEWSKI, J .

PLANT SCIENCE, 1994, 100 (02) :117-128

[3] Mitochondrial evolution [J].

Gray, MW ;

Burger, G ;

Lang, BF .

SCIENCE, 1999, 283 (5407) :1476-1481

[4] The 5S rRNA loop E: Chemical probing and phylogenetic data versus crystal structure [J].

Leontis, NB ;

Westhof, E .

RNA, 1998, 4 (09) :1134-1153

[5]

Leontis NB, 1999, NATO ASI 3 HIGH TECH, V70, P45

[6] Crystallization of engineered Thermus flavus 5S rRNA under earth and microgravity conditions [J].

Lorenz, S ;

Perbandt, M ;

Lippmann, C ;

Moore, K ;

DeLucas, LJ ;

Betzel, C ;

Erdmann, VA .

ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2000, 56 :498-500

[7] Structure of Escherichia coli ribosomal protein L25 complexed with a 5S rRNA fragment at 1.8-Å resolution [J].

Lu, M ;

Steitz, TA .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2000, 97 (05) :2023-2028

[8] The ribosome at atomic resolution [J].

Moore, PB .

BIOCHEMISTRY, 2001, 40 (11) :3243-3250

[9] The structural basis of ribosome activity in peptide bond synthesis [J].

Nissen, P ;

Hansen, J ;

Ban, N ;

Moore, PB ;

Steitz, TA .

SCIENCE, 2000, 289 (5481) :920-930

[10] CLUSTAL-W - IMPROVING THE SENSITIVITY OF PROGRESSIVE MULTIPLE SEQUENCE ALIGNMENT THROUGH SEQUENCE WEIGHTING, POSITION-SPECIFIC GAP PENALTIES AND WEIGHT MATRIX CHOICE [J].

THOMPSON, JD ;

HIGGINS, DG ;

GIBSON, TJ .

NUCLEIC ACIDS RESEARCH, 1994, 22 (22) :4673-4680