EBI metagenomics-a new resource for the analysis and archiving of metagenomic data

被引：77

作者：

Hunter, Sarah ^{[1
]}

Corbett, Matthew ^{[1
]}

Denise, Hubert ^{[1
]}

Fraser, Matthew ^{[1
]}

Gonzalez-Beltran, Alejandra ^{[2
]}

Hunter, Christopher ^{[1
]}

Jones, Philip ^{[1
]}

Leinonen, Rasko ^{[1
]}

McAnulla, Craig ^{[1
]}

Maguire, Eamonn ^{[2
]}

Maslen, John ^{[1
]}

Mitchell, Alex ^{[1
]}

Nuka, Gift ^{[1
]}

Oisel, Arnaud ^{[1
]}

Pesseat, Sebastien ^{[1
]}

Radhakrishnan, Rajesh ^{[1
]}

Rocca-Serra, Philippe ^{[2
]}

Scheremetjew, Maxim ^{[1
]}

Sterk, Peter ^{[2
]}

Vaughan, Daniel ^{[1
]}

Cochrane, Guy ^{[1
]}

Field, Dawn ^{[2
,3
]}

Sansone, Susanna-Assunta ^{[2
]}

机构：

[1] European Bioinformat Inst EMBL EBI, European Mol Biol Lab, Hinxton CB10 1SD, England

[2] Univ Oxford, Oxford E Res Ctr, Oxford OX1 3QG, England

[3] NERC Ctr Ecol & Hydrol, Wallingford OX10 8BB, Oxon, England

来源：

NUCLEIC ACIDS RESEARCH | 2014年 / 42卷 / D1期

基金：

英国生物技术与生命科学研究理事会;

关键词：

RNA; ANNOTATION; DISCOVERY; ACCESS; GENES; WEB;

D O I：

10.1093/nar/gkt961

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

Metagenomics is a relatively recently established but rapidly expanding field that uses high-throughput next-generation sequencing technologies to characterize the microbial communities inhabiting different ecosystems (including oceans, lakes, soil, tundra, plants and body sites). Metagenomics brings with it a number of challenges, including the management, analysis, storage and sharing of data. In response to these challenges, we have developed a new metagenomics resource (http://www.ebi.ac.uk/metagenomics/) that allows users to easily submit raw nucleotide reads for functional and taxonomic analysis by a state-of-the-art pipeline, and have them automatically stored (together with descriptive, standards-compliant metadata) in the European Nucleotide Archive.

引用

页码：D600 / D606

页数：7

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