CH/π interaction in the conformation of peptides.: A database study

被引:84
作者
Umezawa, Y
Tsuboyama, S
Takahashi, H
Uzawa, J
Nishio, M [1 ]
机构
[1] RIKEN, Inst Phys & Chem Res, Wako, Saitama 35101, Japan
[2] Inst Microbial Chem, Shinagawa Ku, Tokyo 141, Japan
关键词
CH/pi interaction; peptide; conformation; database; CSD;
D O I
10.1016/S0968-0896(99)00123-6
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
A study was carried out, with use of the Cambridge Structural Database, to examine the role of the CH/pi interaction in the conformation of peptides. A number of short intramolecular CH/pi distances have been shown in the crystal structure of peptides bearing at least an aromatic residue in the sequence. The molecular structure in the crystal was inspected individually to know whether the conformation is merely a consequence of the so-called packing forces, or the CH/pi interaction plays a role. It has been demonstrated that the CH/pi interaction constitutes one of the key factors in controlling the conformation of peptides. (C) 1999 Elsevier Science Ltd. All rights reserved.
引用
收藏
页码:2021 / 2026
页数:6
相关论文
共 63 条
[1]   THE DEVELOPMENT OF VERSION-3 AND VERSION-4 OF THE CAMBRIDGE STRUCTURAL DATABASE SYSTEM [J].
ALLEN, FH ;
DAVIES, JE ;
GALLOY, JJ ;
JOHNSON, O ;
KENNARD, O ;
MACRAE, CF ;
MITCHELL, EM ;
MITCHELL, GF ;
SMITH, JM ;
WATSON, DG .
JOURNAL OF CHEMICAL INFORMATION AND COMPUTER SCIENCES, 1991, 31 (02) :187-204
[2]  
[Anonymous], CH PI INTERACTION EV
[3]   360-MHZ H-1-NMR CONFORMATIONAL-ANALYSIS OF GLY-PRO-ALA GLY-PRO-CHA GLY-PRO-PHE PEPTIDES [J].
ANTEUNIS, MJO ;
BORREMANS, FAM ;
STEWART, JM ;
LONDON, RE .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1981, 103 (09) :2187-2191
[4]   ON THE LOW-ENERGY SOLUTION CONFORMATION OF SOMATOSTATIN [J].
ARISON, BH ;
HIRSCHMANN, R ;
PALEVEDA, WJ ;
BRADY, SF ;
VEBER, DF .
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 1981, 100 (03) :1148-1153
[5]   RELATIONSHIP OF THE CRYSTAL AND MOLECULAR-STRUCTURE OF LEUCINE-ENKEPHALIN TRIHYDRATE TO THAT OF MORPHINE [J].
AUBRY, A ;
BIRLIRAKIS, N ;
SAKARELLOSDAITSIOTIS, M ;
SAKARELLOS, C ;
MARRAUD, M .
JOURNAL OF THE CHEMICAL SOCIETY-CHEMICAL COMMUNICATIONS, 1988, (14) :963-964
[6]   CONFORMATION AND STRUCTURES OF 2 CYCLOISOMERIC HEXAPEPTIDES - CYCLO(-L-PHE-D-LEU-GLY-L-PHE-L-LEU-GLY-) TETRAHYDRATE AND CYCLO(-L-PHE-D-LEU-GLY-D-PHE-L-LEU-GLY-) DIHYDRATE [J].
BARNES, CL ;
VANDERHELM, D .
ACTA CRYSTALLOGRAPHICA SECTION B-STRUCTURAL SCIENCE, 1982, 38 (OCT) :2589-2595
[7]   CONFORMATIONAL STUDIES ON PEPTIDES - X-RAY STRUCTURE DETERMINATIONS OF 6 N-METHYLATED CYCLIC DIPEPTIDES DERIVED FROM ALANINE, VALINE, AND PHENYLALANINE [J].
BENEDETTI, E ;
MARSH, RE ;
GOODMAN, M .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1976, 98 (21) :6676-6684
[8]   VAN DER WAALS VOLUMES + RADII [J].
BONDI, A .
JOURNAL OF PHYSICAL CHEMISTRY, 1964, 68 (03) :441-+
[9]   AROMATIC-AROMATIC INTERACTION - A MECHANISM OF PROTEIN-STRUCTURE STABILIZATION [J].
BURLEY, SK ;
PETSKO, GA .
SCIENCE, 1985, 229 (4708) :23-28
[10]   ANTIGELLING AND ANTISICKLING BISPHENYL OLIGOPEPTIDES AND PEPTIDE ANALOGS HAVE SIMILAR STRUCTURAL FEATURES [J].
BURLEY, SK ;
WANG, AHJ ;
VOTANO, JR ;
RICH, A .
BIOCHEMISTRY, 1987, 26 (16) :5091-5099