Quantitative analysis of backbone dynamics in a crystalline protein from nitrogen-15 spin-lattice relaxation

被引:97
作者
Giraud, N
Blackledge, M
Goldman, M
Böckmann, A
Lesage, A
Penin, F
Emsley, L [1 ]
机构
[1] Ecole Normale Super Lyon, Chim Lab,DSV 23V, UMR 5182,CEA, CNRS,Lab Rech Convent,DSM 0432, F-69364 Lyon, France
[2] UJF, CEA, CNRS, Inst Biol Struct Jean Pierre Ebel, F-38027 Grenoble, France
[3] CEA Saclay, DSM, DRECAM, Serv Phys Etat Condense, F-91191 Gif Sur Yvette, France
[4] CNRS, UMR 5086, IBCP, Lab Conformat Prot, Lyon, France
关键词
D O I
10.1021/ja055182h
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
A detailed analysis of nitrogen-15 longitudinal relaxation times in microcrystalline proteins is presented. A theoretical model to quantitatively interpret relaxation times is developed in terms of motional amplitude and characteristic time scale. Different averaging schemes are examined in order to propose an analysis of relaxation curves that takes into account the specificity of MAS experiments. In particular, it is shown that magic angle spinning averages the relaxation rate experienced by a single spin over one rotor period, resulting in individual relaxation curves that are dependent on the orientation of their corresponding carousel with respect to the rotor axis. Powder averaging thus leads to a nonexponential behavior in the observed decay curves. We extract dynamic information from experimental decay curves, using a diffusion in a cone model. We apply this study to the analysis of spin-lattice relaxation rates of the microcrystalline protein Crh at two different fields and determine differential dynamic parameters for several residues in the protein.
引用
收藏
页码:18190 / 18201
页数:12
相关论文
共 31 条
[11]   Site-specific backbone dynamics from a crystalline protein by solid-state NMR spectroscopy [J].
Giraud, N ;
Böckmann, A ;
Lesage, A ;
Penin, F ;
Blackledge, M ;
Emsley, L .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2004, 126 (37) :11422-11423
[12]   Characterization of dynamics of perdeuterated proteins by MAS solid-state NMR [J].
Hologne, M ;
Faelber, K ;
Diehl, A ;
Reif, B .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2005, 127 (32) :11208-11209
[13]   Dimerization of Crh by reversible 3D domain swapping induces structural adjustments to its monomeric homologue Hpr [J].
Juy, M ;
Penin, F ;
Favier, A ;
Galinier, A ;
Montserret, R ;
Haser, R ;
Deutscher, J ;
Böckmann, A .
JOURNAL OF MOLECULAR BIOLOGY, 2003, 332 (04) :767-776
[14]   A concept for rapid protein-structure determination by solid-state NMR spectroscopy [J].
Lange, A ;
Becker, S ;
Seidel, K ;
Giller, K ;
Pongs, O ;
Baldus, M .
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2005, 44 (14) :2089-2092
[15]   PADE APPROXIMANTS TO CORRELATION-FUNCTIONS FOR RESTRICTED ROTATIONAL DIFFUSION [J].
LIPARI, G ;
SZABO, A .
JOURNAL OF CHEMICAL PHYSICS, 1981, 75 (06) :2971-2976
[16]   MODEL-FREE APPROACH TO THE INTERPRETATION OF NUCLEAR MAGNETIC-RESONANCE RELAXATION IN MACROMOLECULES .1. THEORY AND RANGE OF VALIDITY [J].
LIPARI, G ;
SZABO, A .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1982, 104 (17) :4546-4559
[17]  
Mack JW, 2000, BIOPOLYMERS, V53, P9, DOI 10.1002/(SICI)1097-0282(200001)53:1<9::AID-BIP2>3.0.CO
[18]  
2-6
[19]   13C CPMAS spectroscopy of deuterated proteins:: CP dynamics, line shapes, and T1 relaxation [J].
Morcombe, CR ;
Gaponenko, V ;
Byrd, RA ;
Zilm, KW .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2005, 127 (01) :397-404
[20]   NMR in drug discovery [J].
Pellecchia, M ;
Sem, DS ;
Wüthrich, K .
NATURE REVIEWS DRUG DISCOVERY, 2002, 1 (03) :211-219