Grains of knowledge: Genomics of model cereals

被引:73
作者
Paterson, AH [1 ]
Freeling, M
Sasaki, T
机构
[1] Univ Georgia, Plant Genome Mapping Lab, Athens, GA 30602 USA
[2] Univ Calif Berkeley, Dept Plant & Microbial Biol, Berkeley, CA 94704 USA
[3] Natl Inst Agrobiol Sci, Tsukuba, Ibaraki 3058602, Japan
关键词
D O I
10.1101/gr.3725905
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The economic and scientific importance of the cereals has motivated a rich history of research into their genetics, development, and evolution. The nearly completed sequence of the rice genome is emblematic of a transition to high-throughput genomics and computational biology that has also pervaded study of many other cereals. The relatively close (ca. <50 million years old) relationships among morphologically diverse cereals native to environments that sample much of global geographic diversity make the cereals particularly attractive for comparative studies of plant genome evolution. Extensive germplasm resources, largely a byproduct of their economic importance, together with growing collections of defined mutants, provide foundations for a host of post-genomic studies to shed more light on the relationship between sequence and function in this important group. Using the rapidly growing capabilities of several informatics resources, genomic data from model cereals are likely to be leveraged tremendously in the study and improvement of a wide range of crop plants that sustain much of the world's population, including many which still lack primary genomic resources.
引用
收藏
页码:1643 / 1650
页数:8
相关论文
共 69 条
[61]   Enrichment of gene-coding sequences in maize by genome filtration [J].
Whitelaw, CA ;
Barbazuk, WB ;
Pertea, G ;
Chan, AP ;
Cheung, F ;
Lee, Y ;
Zheng, L ;
van Heeringen, S ;
Karamycheva, S ;
Bennetzen, JL ;
SanMiguel, P ;
Lakey, N ;
Bedell, J ;
Yuan, Y ;
Budiman, MA ;
Resnick, A ;
Van Aken, S ;
Utterback, T ;
Riedmuller, S ;
Williams, M ;
Feldblyum, T ;
Schubert, K ;
Beachy, R ;
Fraser, CM ;
Quackenbush, J .
SCIENCE, 2003, 302 (5653) :2118-2120
[62]   CONSTRUCTION AND CHARACTERIZATION OF A BACTERIAL ARTIFICIAL CHROMOSOME LIBRARY OF SORGHUM-BICOLOR [J].
WOO, SS ;
JIANG, JM ;
GILL, BS ;
PATERSON, AH ;
WING, RA .
NUCLEIC ACIDS RESEARCH, 1994, 22 (23) :4922-4931
[63]   The effects of artificial selection of the maize genome [J].
Wright, SI ;
Bi, IV ;
Schroeder, SG ;
Yamasaki, M ;
Doebley, JF ;
McMullen, MD ;
Gaut, BS .
SCIENCE, 2005, 308 (5726) :1310-1314
[64]   Genetic and molecular dissection of quantitative traits in rice [J].
Yano, M ;
Sasaki, T .
PLANT MOLECULAR BIOLOGY, 1997, 35 (1-2) :145-153
[65]   The Genomes of Oryza sativa:: A history of duplications [J].
Yu, J ;
Wang, J ;
Lin, W ;
Li, SG ;
Li, H ;
Zhou, J ;
Ni, PX ;
Dong, W ;
Hu, SN ;
Zeng, CQ ;
Zhang, JG ;
Zhang, Y ;
Li, RQ ;
Xu, ZY ;
Li, ST ;
Li, XR ;
Zheng, HK ;
Cong, LJ ;
Lin, L ;
Yin, JN ;
Geng, JN ;
Li, GY ;
Shi, JP ;
Liu, J ;
Lv, H ;
Li, J ;
Wang, J ;
Deng, YJ ;
Ran, LH ;
Shi, XL ;
Wang, XY ;
Wu, QF ;
Li, CF ;
Ren, XY ;
Wang, JQ ;
Wang, XL ;
Li, DW ;
Liu, DY ;
Zhang, XW ;
Ji, ZD ;
Zhao, WM ;
Sun, YQ ;
Zhang, ZP ;
Bao, JY ;
Han, YJ ;
Dong, LL ;
Ji, J ;
Chen, P ;
Wu, SM ;
Liu, JS .
PLOS BIOLOGY, 2005, 3 (02) :266-281
[66]   A draft sequence of the rice genome (Oryza sativa L. ssp indica) [J].
Yu, J ;
Hu, SN ;
Wang, J ;
Wong, GKS ;
Li, SG ;
Liu, B ;
Deng, YJ ;
Dai, L ;
Zhou, Y ;
Zhang, XQ ;
Cao, ML ;
Liu, J ;
Sun, JD ;
Tang, JB ;
Chen, YJ ;
Huang, XB ;
Lin, W ;
Ye, C ;
Tong, W ;
Cong, LJ ;
Geng, JN ;
Han, YJ ;
Li, L ;
Li, W ;
Hu, GQ ;
Huang, XG ;
Li, WJ ;
Li, J ;
Liu, ZW ;
Li, L ;
Liu, JP ;
Qi, QH ;
Liu, JS ;
Li, L ;
Li, T ;
Wang, XG ;
Lu, H ;
Wu, TT ;
Zhu, M ;
Ni, PX ;
Han, H ;
Dong, W ;
Ren, XY ;
Feng, XL ;
Cui, P ;
Li, XR ;
Wang, H ;
Xu, X ;
Zhai, WX ;
Xu, Z .
SCIENCE, 2002, 296 (5565) :79-92
[67]  
Yu YS, 2003, SCIENCE, V300, P1566, DOI 10.1126/science.1083523
[68]   High-Cot sequence analysis of the maize genome [J].
Yuan, YN ;
SanMiguel, PJ ;
Bennetzen, JL .
PLANT JOURNAL, 2003, 34 (02) :249-255
[69]   BGI-RIS: an integrated information resource and comparative analysis workbench for rice genomics [J].
Zhao, WM ;
Wang, J ;
He, XM ;
Huang, XB ;
Jiao, YZ ;
Dai, MT ;
Wei, SL ;
Fu, J ;
Chen, Y ;
Ren, XY ;
Zhang, Y ;
Ni, PX ;
Zhang, JG ;
Lil, SG ;
Wang, J ;
Wong, GKS ;
Zhao, HY ;
Yu, J ;
Yang, HM ;
Wang, J .
NUCLEIC ACIDS RESEARCH, 2004, 32 :D377-D382