Predicting cyclohexane/water distribution coefficients for the SAMPL5 challenge using MOSCED and the SMD solvation model

被引:17
作者
Diaz-Rodriguez, Sebastian [1 ]
Bozada, Samantha M. [1 ]
Phifer, Jeremy R. [1 ]
Paluch, Andrew S. [1 ]
机构
[1] Miami Univ, Dept Chem Paper & Biomed Engn, Oxford, OH 45056 USA
关键词
SAMPL5; SMD; MOSCED; Free energy of solvation; Distribution coefficient; EXPLICIT-HYDROGEN DESCRIPTION; TRANSFERABLE POTENTIALS; MOLECULAR SIMULATION; SOLUBILITY;
D O I
10.1007/s10822-016-9945-9
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
We present blind predictions using the solubility parameter based method MOSCED submitted for the SAMPL5 challenge on calculating cyclohexane/water distribution coefficients at 298 K. Reference data to parameterize MOSCED was generated with knowledge only of chemical structure by performing solvation free energy calculations using electronic structure calculations in the SMD continuum solvent. To maintain simplicity and use only a single method, we approximate the distribution coefficient with the partition coefficient of the neutral species. Over the final SAMPL5 set of 53 compounds, we achieved an average unsigned error of log units (ranking 15 out of 62 entries), the correlation coefficient (R) was (ranking 35), and of the predictions had the correct sign (ranking 30). While used here to predict cyclohexane/water distribution coefficients at 298 K, MOSCED is broadly applicable, allowing one to predict temperature dependent infinite dilution activity coefficients in any solvent for which parameters exist, and provides a means by which an excess Gibbs free energy model may be parameterized to predict composition dependent phase-equilibrium.
引用
收藏
页码:1007 / 1017
页数:11
相关论文
共 32 条
[11]  
the solubility of gases, liquids and solids, DOI DOI 10.1016/S0006-4971(20)78019-5
[12]   Group-contribution+ (GC+) based estimation of properties of pure components: Improved property estimation and uncertainty analysis [J].
Hukkerikar, Amol Shivajirao ;
Sarup, Bent ;
Ten Kate, Antoon ;
Abildskov, Jens ;
Sin, Guerkan ;
Gani, Rafiqul .
FLUID PHASE EQUILIBRIA, 2012, 321 :25-43
[13]   VMD: Visual molecular dynamics [J].
Humphrey, W ;
Dalke, A ;
Schulten, K .
JOURNAL OF MOLECULAR GRAPHICS & MODELLING, 1996, 14 (01) :33-38
[14]   Prediction of cyclohexane-water distribution coefficients with COSMO-RS on the SAMPL5 data set [J].
Klamt, Andreas ;
Eckert, Frank ;
Reinisch, Jens ;
Wichmann, Karin .
JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN, 2016, 30 (11) :959-967
[15]   Revision of MOSCED parameters and extension to solid solubility calculations [J].
Lazzaroni, MJ ;
Bush, D ;
Eckert, CA ;
Frank, TC ;
Gupta, S ;
Olson, JD .
INDUSTRIAL & ENGINEERING CHEMISTRY RESEARCH, 2005, 44 (11) :4075-4083
[16]   Developing a Predictive Form of MOSCED for Nonelectrolyte Solids Using Molecular Simulation: Application to Acetanilide, Acetaminophen, and Phenacetin [J].
Ley, Ryan T. ;
Fuerst, Georgia B. ;
Redeker, Bryce N. ;
Paluch, Andrew S. .
INDUSTRIAL & ENGINEERING CHEMISTRY RESEARCH, 2016, 55 (18) :5415-5430
[17]   Using MD Simulations To Calculate How Solvents Modulate Solubility [J].
Liu, Shuai ;
Cao, Shannon ;
Hoang, Kevin ;
Young, Kayla L. ;
Paluch, Andrew S. ;
Mobley, David L. .
JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2016, 12 (04) :1930-1941
[18]   Universal Solvation Model Based on Solute Electron Density and on a Continuum Model of the Solvent Defined by the Bulk Dielectric Constant and Atomic Surface Tensions [J].
Marenich, Aleksandr V. ;
Cramer, Christopher J. ;
Truhlar, Donald G. .
JOURNAL OF PHYSICAL CHEMISTRY B, 2009, 113 (18) :6378-6396
[19]   Performance of SM6, SM8, and SMD on the SAMPL1 Test Set for the Prediction of Small-Molecule Solvation Free Energies [J].
Marenich, Aleksandr V. ;
Cramer, Christopher J. ;
Truhlar, Donald G. .
JOURNAL OF PHYSICAL CHEMISTRY B, 2009, 113 (14) :4538-4543
[20]   Predicting the excess solubility of acetanilide, acetaminophen, phenacetin, benzocaine, and caffeine in binary water/ethanol mixtures via molecular simulation [J].
Paluch, Andrew S. ;
Parameswaran, Sreeja ;
Liu, Shuai ;
Kolavennu, Anasuya ;
Mobley, David L. .
JOURNAL OF CHEMICAL PHYSICS, 2015, 142 (04)