Preferred Geometries and Energies of Sulfur Sulfur Interactions in Crystal Structures

被引:60
作者
Antonijevic, Ivana S. [1 ]
Janjic, Goran. V. [1 ]
Milcic, Milos K. [2 ]
Zaric, Snezana D. [2 ,3 ]
机构
[1] Univ Belgrade, Inst Chem Technol & Met, Njegoseva 12, Belgrade 11000, Serbia
[2] Univ Belgrade, Dept Chem, Studentski Trg 12-16, Belgrade 11000, Serbia
[3] Texas A&M Univ Qatar, Dept Chem, POB 23874, Doha, Qatar
关键词
CHALCOGEN-CHALCOGEN INTERACTIONS; CENTER-DOT-S; CORRELATED MOLECULAR CALCULATIONS; AROMATIC-AROMATIC INTERACTIONS; INTRAMOLECULAR HYDROGEN-BONDS; NONBONDED ATOMIC CONTACTS; GAUSSIAN-BASIS SETS; PI-PI INTERACTIONS; THEORETICAL INVESTIGATIONS; DIVALENT SULFUR;
D O I
10.1021/acs.cgd.5b01058
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
It has been demonstrated that sulfur sulfur interactions can exist in various molecular systems. In this work we investigated sulfur-sulfur interactions in crystal structures of small molecules by analyzing geometric data from the Cambridge Structural Database (CSD) and by quantum chemical calculations. The analysis of cysteine residues (R-CH2SH) in the crystal structures from the CSD indicates that in the sulfur sulfur interactions the preferred is the parallel orientation of two C-S-H planes. Quantum chemical calculations were performed on model systems of methanethiol dimers. The most stable geometry of methanethiol dimer with parallel orientation of C-S-H planes is significantly strong; the interaction energy is -1.80 kcal/mol calculated at the very accurate CCSD(T)/CBS level. However, the strongest sulfur sulfur interaction in methanethiol dimer (-2.20 kcal/mol) is the geometry with the sigma-hole interaction, where the positive potential on one sulfur atom (sigma-hole) interacts with negative potential on the sulfur atom of the second molecule. SAPT decomposition of the interaction energies was performed in order to explain the nature of the interactions. This study points out the importance of parallel interactions of cysteine residues and can be useful for recognizing the sulfur sulfur interactions in the crystal structures and biomolecules.
引用
收藏
页码:632 / 639
页数:8
相关论文
共 72 条
[31]   ELECTRON-AFFINITIES OF THE 1ST-ROW ATOMS REVISITED - SYSTEMATIC BASIS-SETS AND WAVE-FUNCTIONS [J].
KENDALL, RA ;
DUNNING, TH ;
HARRISON, RJ .
JOURNAL OF CHEMICAL PHYSICS, 1992, 96 (09) :6796-6806
[32]   Understanding of assembly phenomena by aromatic-aromatic interactions: Benzene dimer and the substituted systems [J].
Lee, Eun Cheol ;
Kim, Dongwook ;
Jurecka, Petr ;
Tarakeshwar, P. ;
Hobza, Pavel ;
Kim, Kwang S. .
JOURNAL OF PHYSICAL CHEMISTRY A, 2007, 111 (18) :3446-3457
[33]   Theoretical and crystallographic data investigations of noncovalent S•••O interactions [J].
Lu Junming ;
Lu Yunxiang ;
Yang Subin ;
Zhu Weiliang .
STRUCTURAL CHEMISTRY, 2011, 22 (04) :757-763
[34]   Approximations to complete basis set-extrapolated, highly correlated non-covalent interaction energies [J].
Mackie, Iain D. ;
DiLabio, Gino A. .
JOURNAL OF CHEMICAL PHYSICS, 2011, 135 (13)
[35]   Correlation between crystal structure and mobility in organic field-effect transistors based on single crystals of tetrathiafulvalene derivatives [J].
Mas-Torrent, M ;
Hadley, P ;
Bromley, ST ;
Ribas, X ;
Tarrés, J ;
Mas, M ;
Molins, E ;
Veciana, J ;
Rovira, C .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2004, 126 (27) :8546-8553
[36]   Benchmark Interaction Energies for Biologically Relevant Noncovalent Complexes Containing Divalent Sulfur [J].
Mintz, Benjamin J. ;
Parks, Jerry M. .
JOURNAL OF PHYSICAL CHEMISTRY A, 2012, 116 (03) :1086-1092
[37]   Note on an approximation treatment for many-electron systems [J].
Moller, C ;
Plesset, MS .
PHYSICAL REVIEW, 1934, 46 (07) :0618-0622
[38]   Density functional and semiempirical molecular orbital methods including dispersion corrections for the accurate description of noncovalent interactions involving sulfur-containing molecules [J].
Morgado, Claudio A. ;
McNamara, Jonathan P. ;
Hillier, Ian H. ;
Burton, Neil A. .
JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2007, 3 (05) :1656-1664
[39]   σ-hole bonding:: molecules containing group VI atoms [J].
Murray, Jane S. ;
Lane, Pat ;
Clark, Timothy ;
Politzer, Peter .
JOURNAL OF MOLECULAR MODELING, 2007, 13 (10) :1033-1038
[40]   Expansion of the σ-hole concept [J].
Murray, Jane S. ;
Lane, Pat ;
Politzer, Peter .
JOURNAL OF MOLECULAR MODELING, 2009, 15 (06) :723-729