Stochastic modeling of regulation of gene expression by multiple small RNAs

被引:18
作者
Baker, Charles [1 ]
Jia, Tao [1 ]
Kulkarni, Rahul V. [1 ]
机构
[1] Virginia Polytech Inst & State Univ, Dept Phys, Blacksburg, VA 24061 USA
来源
PHYSICAL REVIEW E | 2012年 / 85卷 / 06期
基金
美国国家科学基金会;
关键词
NOISE; MICRORNAS; REPRESSION; ACTIVATION; GENOMICS; CHANCE; ROLES;
D O I
10.1103/PhysRevE.85.061915
中图分类号
O35 [流体力学]; O53 [等离子体物理学];
学科分类号
070204 [等离子体物理]; 070301 [无机化学];
摘要
A wealth of new research has highlighted the critical roles of small noncoding RNAs (sRNAs) in diverse processes, such as quorum sensing and cellular responses to stress. The pathways controlling these processes often have a central motif composed of a master regulator protein whose expression is controlled by multiple sRNAs. However, the stochastic gene expression of a single target gene regulated by multiple sRNAs is currently not well understood. To address this issue, we analyze a stochastic model of regulation of gene expression by multiple sRNAs. For this model, we derive exact analytic results for the regulated protein distribution, including compact expressions for its mean and variance. The derived results provide insights into the roles of multiple sRNAs in fine-tuning the noise in gene expression. In particular, we show that, in contrast to regulation by a single sRNA, multiple sRNAs provide a mechanism for independently controlling the mean and variance of the regulated protein distribution.
引用
收藏
页数:6
相关论文
共 34 条
[1]
MicroRNAs: Genomics, biogenesis, mechanism, and function (Reprinted from Cell, vol 116, pg 281-297, 2004) [J].
Bartel, David P. .
CELL, 2007, 131 (04) :11-29
[2]
Base pairing small RNAs and their roles in global regulatory networks [J].
Beisel, Chase L. ;
Storz, Gisela .
FEMS MICROBIOLOGY REVIEWS, 2010, 34 (05) :866-882
[4]
Biswas S. Iyer, 2009, THESIS OHIO STATE U
[5]
Functional roles for noise in genetic circuits [J].
Eldar, Avigdor ;
Elowitz, Michael B. .
NATURE, 2010, 467 (7312) :167-173
[6]
Connecting protein and mRNA burst distributions for stochastic models of gene expression [J].
Elgart, Vlad ;
Jia, Tao ;
Fenley, Andrew T. ;
Kulkarni, Rahul .
PHYSICAL BIOLOGY, 2011, 8 (04)
[7]
Applications of Little's Law to stochastic models of gene expression [J].
Elgart, Vlad ;
Jia, Tao ;
Kulkarni, Rahul V. .
PHYSICAL REVIEW E, 2010, 82 (02)
[8]
Biological principles of microRNA-mediated regulation: shared themes amid diversity [J].
Flynt, Alex S. ;
Lai, Eric C. .
NATURE REVIEWS GENETICS, 2008, 9 (11) :831-842
[9]
A chance at survival: gene expression noise and phenotypic diversification strategies [J].
Fraser, Dawn ;
Kaern, Mads .
MOLECULAR MICROBIOLOGY, 2009, 71 (06) :1333-1340
[10]
Activation of gene expression by small RNA [J].
Froehlich, Kathrin S. ;
Vogel, Joerg .
CURRENT OPINION IN MICROBIOLOGY, 2009, 12 (06) :674-682