Computer simulations of lipid membrane domains

被引:148
作者
Bennett, W. F. Drew
Tieleman, D. Peter [1 ]
机构
[1] Univ Calgary, Dept Biol Sci, Calgary, AB T2N 1N4, Canada
来源
BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES | 2013年 / 1828卷 / 08期
基金
加拿大自然科学与工程研究理事会;
关键词
Lipid raft; Protein sorting; Cholesterol; Molecular simulation; Phase diagram; Lipid domain; MOLECULAR-DYNAMICS SIMULATIONS; COARSE-GRAINED MODEL; PROTEIN-COUPLED RECEPTORS; CHOLESTEROL FLIP-FLOP; PHOSPHOLIPID-MEMBRANES; NEUTRON-SCATTERING; LATERAL DIFFUSION; PHASE-TRANSITION; MIXED BILAYERS; MECHANOSENSITIVE CHANNEL;
D O I
10.1016/j.bbamem.2013.03.004
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
There is great diversity in the composition and structure of biological lipid membranes. We are beginning to appreciate the crucial role of lipids in many cellular processes, and characterize some of the lateral structures within membranes that could play a role in the activity of lipids. Simulations probe molecular level interactions between single molecules, which provide complementary information to experiments. Lipid membrane simulations have reached an exciting point, where the time and length scales of our simulations are approaching experimental resolutions and can be used to interpret experiments on increasingly complex model membranes. The focus of this review is on recent molecular simulations of domain formation in lipid bilayers. We highlight a number of recent examples where simulations are used in collaboration with experiments. We review recent simulation studies on lipid-lipid interactions related to domain formation and on lipid-protein interactions relevant for lipid raft function. (C) 2013 Elsevier B.V. All rights reserved.
引用
收藏
页码:1765 / 1776
页数:12
相关论文
共 139 条
[31]   Molecular structure of the lecithin ripple phase [J].
de Vries, AH ;
Yefimov, S ;
Mark, AE ;
Marrink, SJ .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2005, 102 (15) :5392-5396
[32]   Transmembrane helices can induce domain formation in crowded model membranes [J].
Domanski, Jan ;
Marrink, Siewert J. ;
Schafer, Lars V. .
BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES, 2012, 1818 (04) :984-994
[33]   Direct observation of the nanoscale dynamics of membrane lipids in a living cell [J].
Eggeling, Christian ;
Ringemann, Christian ;
Medda, Rebecca ;
Schwarzmann, Guenter ;
Sandhoff, Konrad ;
Polyakova, Svetlana ;
Belov, Vladimir N. ;
Hein, Birka ;
von Middendorff, Claas ;
Schoenle, Andreas ;
Hell, Stefan W. .
NATURE, 2009, 457 (7233) :1159-U121
[34]   Lipid domains in bacterial membranes and the action of antimicrobial agents [J].
Epand, Richard M. ;
Epand, Raquel F. .
BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES, 2009, 1788 (01) :289-294
[35]  
Ewers H., 2011, Cold Spring Harb. Perspect. Biol, V3
[36]   Lateral diffusion in lipid membranes through collective flows [J].
Falck, Emma ;
Rog, Tomasz ;
Karttunen, Mikko ;
Vattulainen, Ilpo .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2008, 130 (01) :44-+
[37]   Simulation of domain formation in DLPC-DSPC mixed bilayers [J].
Faller, R ;
Marrink, SJ .
LANGMUIR, 2004, 20 (18) :7686-7693
[38]   Phase diagrams and lipid domains in multicomponent lipid bilayer mixtures [J].
Feigenson, Gerald W. .
BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES, 2009, 1788 (01) :47-52
[39]   Molecular dynamics simulations of lipid bilayers [J].
Feller, SE .
CURRENT OPINION IN COLLOID & INTERFACE SCIENCE, 2000, 5 (3-4) :217-223
[40]   Noninvasive Neutron Scattering Measurements Reveal Slower Cholesterol Transport in Model Lipid Membranes [J].
Garg, S. ;
Porcar, L. ;
Woodka, A. C. ;
Butler, P. D. ;
Perez-Salas, U. .
BIOPHYSICAL JOURNAL, 2011, 101 (02) :370-377