The International Nucleotide Sequence Database Collaboration

被引：86

作者：

Nakamura, Yasukazu ^{[1
]}

Cochrane, Guy ^{[2
]}

Karsch-Mizrachi, Ilene ^{[3
]}

机构：

[1] Res Org Informat & Syst, Natl Inst Genet, DDBJ Ctr, Mishima, Shizuoka 4118510, Japan

[2] EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

[3] NIH, Natl Ctr Biotechnol Informat, Natl Lib Med, Bethesda, MD 20892 USA

来源：

NUCLEIC ACIDS RESEARCH | 2013年 / 41卷 / D1期

基金：

英国惠康基金; 美国国家卫生研究院; 英国生物技术与生命科学研究理事会;

关键词：

ARCHIVE;

D O I：

10.1093/nar/gks1084

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

The International Nucleotide Sequence Database Collaboration (INSDC; http://www.insdc.org), one of the longest-standing global alliances of biological data archives, captures, preserves and provides comprehensive public domain nucleotide sequence information. Three partners of the INSDC work in cooperation to establish formats for data and metadata and protocols that facilitate reliable data submission to their databases and support continual data exchange around the world. In this article, the INSDC current status and update for the year of 2012 are presented. Among discussed items of international collaboration meeting in 2012, BioSample database and changes in submission are described as topics.

引用

页码：D21 / D24

页数：4

共 7 条

[1] Major submissions tool developments at the European nucleotide archive [J].

Amid, Clara ;

Birney, Ewan ;

Bower, Lawrence ;

Cerdeno-Tarraga, Ana ;

Cheng, Ying ;

Cleland, Iain ;

Faruque, Nadeem ;

Gibson, Richard ;

Goodgame, Neil ;

Hunter, Christopher ;

Jang, Mikyung ;

Leinonen, Rasko ;

Liu, Xin ;

Oisel, Arnaud ;

Pakseresht, Nima ;

Plaister, Sheila ;

Radhakrishnan, Rajesh ;

Reddy, Kethi ;

Riviere, Stephane ;

Rossello, Marc ;

Senf, Alexander ;

Smirnov, Dimitriy ;

Ten Hoopen, Petra ;

Vaughan, Daniel ;

Vaughan, Robert ;

Zalunin, Vadim ;

Cochrane, Guy .

NUCLEIC ACIDS RESEARCH, 2012, 40 (D1) :D43-D47

[2] BioProject and BioSample databases at NCBI: facilitating capture and organization of metadata [J].

Barrett, Tanya ;

Clark, Karen ;

Gevorgyan, Robert ;

Gorelenkov, Vyacheslav ;

Gribov, Eugene ;

Karsch-Mizrachi, Ilene ;

Kimelman, Michael ;

Pruitt, Kim D. ;

Resenchuk, Sergei ;

Tatusova, Tatiana ;

Yaschenko, Eugene ;

Ostell, James .

NUCLEIC ACIDS RESEARCH, 2012, 40 (D1) :D57-D63

[3] GenBank [J].

Benson, Dennis A. ;

Karsch-Mizrachi, Ilene ;

Clark, Karen ;

Lipman, David J. ;

Ostell, James ;

Sayers, Eric W. .

NUCLEIC ACIDS RESEARCH, 2012, 40 (D1) :D48-D53

[4] The BioSample Database (BioSD) at the European Bioinformatics Institute [J].

Gostev, Mikhail ;

Faulconbridge, Adam ;

Brandizi, Marco ;

Fernandez-Banet, Julio ;

Sarkans, Ugis ;

Brazma, Alvis ;

Parkinson, Helen .

NUCLEIC ACIDS RESEARCH, 2012, 40 (D1) :D64-D70

[5] The International Nucleotide Sequence Database Collaboration [J].

Karsch-Mizrachi, Ilene ;

Nakamura, Yasukazu ;

Cochrane, Guy .

NUCLEIC ACIDS RESEARCH, 2012, 40 (D1) :D33-D37

[6] The sequence read archive: explosive growth of sequencing data [J].

Kodama, Yuichi ;

Shumway, Martin ;

Leinonen, Rasko .

NUCLEIC ACIDS RESEARCH, 2012, 40 (D1) :D54-D56

[7] The DNA Data Bank of Japan launches a new resource, the DDBJ Omics Archive of functional genomics experiments [J].

Kodama, Yuichi ;

Mashima, Jun ;

Kaminuma, Eli ;

Gojobori, Takashi ;

Ogasawara, Osamu ;

Takagi, Toshihisa ;

Okubo, Kousaku ;

Nakamura, Yasukazu .

NUCLEIC ACIDS RESEARCH, 2012, 40 (D1) :D38-D42

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