共 56 条
Four stage liquid chromatographic selection of methionyl peptides for peptide-centric proteome analysis: The proteome of human multipotent adult progenitor cells
被引:23
作者:

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Pinxteren, J
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Univ Ghent, Fac Med & Hlth Sci, Dept Biochem & Med Prot Res, B-9000 Ghent, Belgium Univ Ghent, Fac Med & Hlth Sci, Dept Biochem & Med Prot Res, B-9000 Ghent, Belgium

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Hugelier, K
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Univ Ghent, Fac Med & Hlth Sci, Dept Biochem & Med Prot Res, B-9000 Ghent, Belgium Univ Ghent, Fac Med & Hlth Sci, Dept Biochem & Med Prot Res, B-9000 Ghent, Belgium

Staes, A
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Univ Ghent, Fac Med & Hlth Sci, Dept Biochem & Med Prot Res, B-9000 Ghent, Belgium Univ Ghent, Fac Med & Hlth Sci, Dept Biochem & Med Prot Res, B-9000 Ghent, Belgium

Van Damme, J
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Univ Ghent, Fac Med & Hlth Sci, Dept Biochem & Med Prot Res, B-9000 Ghent, Belgium Univ Ghent, Fac Med & Hlth Sci, Dept Biochem & Med Prot Res, B-9000 Ghent, Belgium

Martens, L
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Univ Ghent, Fac Med & Hlth Sci, Dept Biochem & Med Prot Res, B-9000 Ghent, Belgium Univ Ghent, Fac Med & Hlth Sci, Dept Biochem & Med Prot Res, B-9000 Ghent, Belgium

Vandekerckhove, J
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Univ Ghent, Fac Med & Hlth Sci, Dept Biochem & Med Prot Res, B-9000 Ghent, Belgium Univ Ghent, Fac Med & Hlth Sci, Dept Biochem & Med Prot Res, B-9000 Ghent, Belgium
机构:
[1] Univ Ghent, Fac Med & Hlth Sci, Dept Biochem & Med Prot Res, B-9000 Ghent, Belgium
关键词:
diagonal chromatography;
gel-free proteomics;
COFRADIC;
multidimensional chromatography;
D O I:
10.1021/pr060026a
中图分类号:
Q5 [生物化学];
学科分类号:
071010 ;
081704 ;
摘要:
Serial application of strong cation-exchange and diagonal reversed-phase chromatography selecting methionyl peptides by stepwise shifting them from their reduced to their sulfoxide and sulfone forms generates a four-stage fractionation system, allowing high coverage analysis of complex proteome digests by LC-MALDI-MS/MS. Application to the proteome of a human multipotent adult progenitor cell line (MAPC) identified 2151 proteins with high confidence as on average four MS/MS-spectra were linked to each protein. Our dataset contains several novel, potential marker proteins that may be evaluated as affinity-anchors for isolating different adult stem cells in further studies. Furthermore, at least 2 tyrosine kinases that were previously linked to the self-renewal potential of stem cells were identified, validating the stemness of the analyzed cells. We also present data hinting at possible involvement of the ubiquitin/proteasome machinery in steering proliferation and/or differentiation of MAPC. Finally, following comparison of the MAPC proteome with proteomes of four human differentiated cell lines reveals differential usage of chromosomal information: compared to differentiated cells, MAPC do not appear to hold any preference for expressing genes located on specific chromosomes.
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页码:1415 / 1428
页数:14
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Beijing Inst Radiat Med, Beijing 100850, Peoples R China Beijing Inst Radiat Med, Beijing 100850, Peoples R China

Li, XH
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Beijing Inst Radiat Med, Beijing 100850, Peoples R China Beijing Inst Radiat Med, Beijing 100850, Peoples R China

Lu, Z
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Beijing Inst Radiat Med, Beijing 100850, Peoples R China Beijing Inst Radiat Med, Beijing 100850, Peoples R China

Cai, Y
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Beijing Inst Radiat Med, Beijing 100850, Peoples R China Beijing Inst Radiat Med, Beijing 100850, Peoples R China

Qian, XH
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Beijing Inst Radiat Med, Beijing 100850, Peoples R China Beijing Inst Radiat Med, Beijing 100850, Peoples R China
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Fliser, D
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机构: Hannover Med Sch, D-30625 Hannover, Germany

Wittke, S
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机构: Hannover Med Sch, D-30625 Hannover, Germany

Mischak, H
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机构: Hannover Med Sch, D-30625 Hannover, Germany
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Diagonal reverse-phase chromatography applications in peptide-centric proteomics: Ahead of catalogue-omics?
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Van Damme, P
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State Univ Ghent VIB, Dept Med Prot Res, Dept Biochem, B-9000 Ghent, Belgium State Univ Ghent VIB, Dept Med Prot Res, Dept Biochem, B-9000 Ghent, Belgium

Martens, L
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State Univ Ghent VIB, Dept Med Prot Res, Dept Biochem, B-9000 Ghent, Belgium State Univ Ghent VIB, Dept Med Prot Res, Dept Biochem, B-9000 Ghent, Belgium

Vandekerckhove, J
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State Univ Ghent VIB, Dept Med Prot Res, Dept Biochem, B-9000 Ghent, Belgium State Univ Ghent VIB, Dept Med Prot Res, Dept Biochem, B-9000 Ghent, Belgium