Trome, trEST and trGEN: databases of predicted protein sequences

被引：16

作者：

Sperisen, P

Iseli, C

Pagni, M

Stevenson, BJ

机构：

[1] Ludwig Inst Canc Res, Swiss Inst Bioinformat, CH-1066 Epalinges, Switzerland

[2] Ludwig Inst Canc Res, ISREC, CH-1066 Epalinges, Switzerland

[3] Ludwig Inst Canc Res, Off Informat Technol, CH-1066 Epalinges, Switzerland

来源：

NUCLEIC ACIDS RESEARCH | 2004年 / 32卷

关键词：

D O I：

10.1093/nar/gkh067

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

We previously introduced two new protein databases (trEST and trGEN) of hypothetical protein sequences predicted from EST and HTG sequences, respectively. Here, we present the updates made on these two databases plus a new database (trome), which uses alignments of EST data to HTG or full genomes to generate virtual transcripts and coding sequences. This new database is of higher quality and since it contains the information in a much denser format it is of much smaller size. These new databases are in a Swiss-Prot-like format and are updated on a weekly basis (trEST and trGEN) or every 3 months (trome). They can be downloaded by anonymous ftp from ftp://ftp.isrec.isb-sib.ch/pub/ databases.

引用

页码：D509 / D511

页数：3

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