Differential gene expression technologies for identifying surrogate markers of drug efficacy and toxicity

被引:23
作者
Rininger, JA [1 ]
DiPippo, VA [1 ]
Gould-Rothberg, BE [1 ]
机构
[1] Curagen Corp, New Haven, CT 06511 USA
关键词
D O I
10.1016/S1359-6446(00)01597-X
中图分类号
R9 [药学];
学科分类号
1007 ;
摘要
Advances in the rapidly evolving discipline of pharmacogenomics have forced the biotechnology and pharmaceutical industries to integrate differential gene expression profiling into their drug discovery and development strategies. Here we highlight the use of differential gene expression technologies for the elucidation of both drug efficacy and toxicity as well as novel candidate genes for pharmacogenetic analyses to assess individual variability to drug response. This will include an overview of the different technologies created to facilitate pharmacogenomic analyses and to highlight advantages and disadvantages of these emerging methodologies. Two high-throughput differential gene expression technologies, microarrays and GeneCalling (R), will be presented in detail.
引用
收藏
页码:560 / 568
页数:9
相关论文
共 47 条
[1]   Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays [J].
Alon, U ;
Barkai, N ;
Notterman, DA ;
Gish, K ;
Ybarra, S ;
Mack, D ;
Levine, AJ .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1999, 96 (12) :6745-6750
[2]   Gene Ontology: tool for the unification of biology [J].
Ashburner, M ;
Ball, CA ;
Blake, JA ;
Botstein, D ;
Butler, H ;
Cherry, JM ;
Davis, AP ;
Dolinski, K ;
Dwight, SS ;
Eppig, JT ;
Harris, MA ;
Hill, DP ;
Issel-Tarver, L ;
Kasarskis, A ;
Lewis, S ;
Matese, JC ;
Richardson, JE ;
Ringwald, M ;
Rubin, GM ;
Sherlock, G .
NATURE GENETICS, 2000, 25 (01) :25-29
[3]   Pharmacogenomics - it's not just pharmacogenetics [J].
Bailey, DS ;
Bondar, A ;
Furness, LM .
CURRENT OPINION IN BIOTECHNOLOGY, 1998, 9 (06) :595-601
[4]   High-throughput gene expression analysis using SAGE [J].
Bertelsen, AH ;
Velculescu, VE .
DRUG DISCOVERY TODAY, 1998, 3 (04) :152-159
[5]   Options available - from start to finish - for obtaining expression data by microarray [J].
Bowtell, DDL .
NATURE GENETICS, 1999, 21 (Suppl 1) :25-32
[6]   Expression profiling of the maize flavonoid pathway genes controlled by estradiol-inducible transcription factors CRC and P [J].
Bruce, W ;
Folkerts, O ;
Garnaat, C ;
Crasta, O ;
Roth, B ;
Bowen, B .
PLANT CELL, 2000, 12 (01) :65-79
[7]   Peroxisome proliferator-activated receptors: Nuclear control of metabolism [J].
Desvergne, B ;
Wahli, W .
ENDOCRINE REVIEWS, 1999, 20 (05) :649-688
[8]   Expression profiling using cDNA microarrays [J].
Duggan, DJ ;
Bittner, M ;
Chen, YD ;
Meltzer, P ;
Trent, JM .
NATURE GENETICS, 1999, 21 (Suppl 1) :10-14
[9]   Cluster analysis and display of genome-wide expression patterns [J].
Eisen, MB ;
Spellman, PT ;
Brown, PO ;
Botstein, D .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1998, 95 (25) :14863-14868
[10]   Unraveling the central nervous system pathways underlying responses to leptin [J].
Elmquist, JK ;
Maratos-Flier, E ;
Saper, CB ;
Flier, JS .
NATURE NEUROSCIENCE, 1998, 1 (06) :445-450