Folding of Cu, Zn superoxide dismutase and familial amyotrophic lateral sclerosis

被引:59
作者
Khare, SD
Ding, F
Dokholyan, NV [1 ]
机构
[1] Univ N Carolina, Sch Med, Dept Biochem & Biophys, Chapel Hill, NC 27599 USA
[2] Boston Univ, Dept Phys, Ctr Polymer Studies, Boston, MA 02215 USA
关键词
Cu; Zn superoxide dismutase; familial amyotrophic lateral sclerosis; molecular dynamics simulations; aggregation; misfolding;
D O I
10.1016/j.jmb.2003.09.069
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Cu, Zn superoxide dismutase (SOD1) has been implicated in the familial form of the neurodegenerative disease amyotrophic lateral sclerosis (ALS). It has been suggested that mutant mediated SOD1 misfolding/aggregation is an integral part of the pathology of ALS. We study the folding thermodynamics and kinetics of SOD1 using a hybrid molecular dynamics approach. We reproduce the experimentally observed SOD1 folding thermodynamics and find that the residues which contribute the most to SOD1 thermal stability are also crucial for apparent two-state folding kinetics. Surprisingly, we find that these residues are located on the surface of the protein and not in the hydrophobic core. Mutations in some of the identified residues are found in patients with the disease. We argue that the identified residues may play an important role in aggregation. To further characterize the folding of SOD1, we study the role of cysteine residues in folding and find that non-native disulfide bond formation may significantly alter SOD1 folding dynamics and aggregation propensity. (C) 2003 Elsevier Ltd. All rights reserved.
引用
收藏
页码:515 / 525
页数:11
相关论文
共 73 条
[1]   NON-INTERACTING LOCAL-STRUCTURE MODEL OF FOLDING AND UNFOLDING TRANSITION IN GLOBULAR-PROTEINS .2. APPLICATION TO TWO-DIMENSIONAL LATTICE PROTEINS [J].
ABE, H ;
GO, N .
BIOPOLYMERS, 1981, 20 (05) :1013-1031
[2]   SPECIFIC NUCLEUS AS THE TRANSITION-STATE FOR PROTEIN-FOLDING - EVIDENCE FROM THE LATTICE MODEL [J].
ABKEVICH, VI ;
GUTIN, AM ;
SHAKHNOVICH, EI .
BIOCHEMISTRY, 1994, 33 (33) :10026-10036
[3]   Role of the dimeric structure in Cu,Zn superoxide dismutase -: pH-dependent, reversible denaturation of the monomeric enzyme from Escherichia coli [J].
Battistoni, A ;
Folcarelli, S ;
Cervoni, L ;
Polizio, F ;
Desideri, A ;
Giartosio, A ;
Rotilio, G .
JOURNAL OF BIOLOGICAL CHEMISTRY, 1998, 273 (10) :5655-5661
[4]   Superoxide dismutase and the death of motoneurons in ALS [J].
Beckman, JS ;
Estévez, AG ;
Crow, JR .
TRENDS IN NEUROSCIENCES, 2001, 24 (11) :S15-S20
[5]   Thermodynamics and folding kinetics analysis of the SH3 domain from discrete molecular dynamics [J].
Borreguero, JM ;
Dokholyan, NV ;
Buldyrev, SV ;
Shakhnovich, EI ;
Stanley, HE .
JOURNAL OF MOLECULAR BIOLOGY, 2002, 318 (03) :863-876
[6]   Novel dimeric interface and electrostatic recognition in bacterial Cu,Zn superoxide dismutase [J].
Bourne, Y ;
Redford, SM ;
Steinman, HM ;
Lepock, JR ;
Tainer, JA ;
Getzoff, ED .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1996, 93 (23) :12774-12779
[7]   Pathogenesis of amyotrophic lateral sclerosis: a critical review [J].
Bromberg, MB .
CURRENT OPINION IN NEUROLOGY, 1999, 12 (05) :581-588
[8]   CHARMM - A PROGRAM FOR MACROMOLECULAR ENERGY, MINIMIZATION, AND DYNAMICS CALCULATIONS [J].
BROOKS, BR ;
BRUCCOLERI, RE ;
OLAFSON, BD ;
STATES, DJ ;
SWAMINATHAN, S ;
KARPLUS, M .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 1983, 4 (02) :187-217
[9]   Up-regulation of protein chaperones preserves viability of cells expressing toxic Cu/Zn-superoxide dismutase mutants associated with amyotrophic lateral sclerosis [J].
Bruening, W ;
Roy, J ;
Giasson, B ;
Figlewicz, DA ;
Mushynski, WE ;
Durham, HD .
JOURNAL OF NEUROCHEMISTRY, 1999, 72 (02) :693-699
[10]   Aggregation and motor neuron toxicity of an ALS-linked SOD1 mutant independent from wild-type SOD1 [J].
Bruijn, LI ;
Houseweart, MK ;
Kato, S ;
Anderson, KL ;
Anderson, SD ;
Ohama, E ;
Reaume, AG ;
Scott, RW ;
Cleveland, DW .
SCIENCE, 1998, 281 (5384) :1851-1854