TrSDB: a proteome database of transcription factors

被引：12

作者：

Hermoso, A

Aguilar, D

Aviles, FX

Querol, E ^{[1
]}

机构：

[1] Univ Autonoma Barcelona, Inst Biotecnol & Biomed, E-08193 Barcelona, Spain

[2] Univ Autonoma Barcelona, Dept Bioquim & Biol Mol, E-08193 Barcelona, Spain

来源：

NUCLEIC ACIDS RESEARCH | 2004年 / 32卷

关键词：

D O I：

10.1093/nar/gkh101

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

TrSDB-TranScout Database-(http://ibb.uab.es/trsdb) is a proteome database of eukaryotic transcription factors based upon predicted motifs by TranScout and data sources such as InterPro and Gene Ontology Annotation. Nine eukaryotic proteomes are included in the current version. Extensive and diverse information for each database entry, different analyses considering TranScout classification and similarity relationships are offered for research on transcription factors or gene expression.

引用

页码：D171 / D173

页数：3

共 12 条

[1] TranScout: prediction of gene expression regulatory proteins from their sequences
Aguilar, D
Oliva, B
Aviles, FX
Querol, E
[J]. BIOINFORMATICS, 2002, 18 (04) : 597 - 607
[2] Aloy P, 1997, COMPUT APPL BIOSCI, V13, P231
[3] BASIC LOCAL ALIGNMENT SEARCH TOOL
ALTSCHUL, SF
GISH, W
MILLER, W
MYERS, EW
LIPMAN, DJ
[J]. JOURNAL OF MOLECULAR BIOLOGY, 1990, 215 (03) : 403 - 410
[4] The gene ontology annotation (GOA) project: Implementation of GO in SWISS-PROT, TrEMBL, and InterPro
Camon, E
Magrane, M
Barrell, D
Binns, D
Fleischmann, W
Kersey, P
Mulder, N
Oinn, T
Maslen, J
Cox, A
Apweiler, R
[J]. GENOME RESEARCH, 2003, 13 (04) : 662 - 672
[5] Relation between amino acid composition and cellular location of proteins
Cedano, J
Aloy, P
PerezPons, JA
Querol, E
[J]. JOURNAL OF MOLECULAR BIOLOGY, 1997, 266 (03) : 594 - 600
[6] The phylogenetic diversity of eukaryotic transcription
Coulson, RMR
Ouzounis, CA
[J]. NUCLEIC ACIDS RESEARCH, 2003, 31 (02) : 653 - 660
[7] Transcription-associated protein families are primarily taxon-specific
Coulson, RMR
Enright, AJ
Ouzounis, CA
[J]. BIOINFORMATICS, 2001, 17 (01) : 95 - 97
[8] Transcription factors: bound to activate or repress
Latchman, DS
[J]. TRENDS IN BIOCHEMICAL SCIENCES, 2001, 26 (04) : 211 - 213
[9] TRANSFAC®:: transcriptional regulation, from patterns to profiles
Matys, V
Fricke, E
Geffers, R
Gössling, E
Haubrock, M
Hehl, R
Hornischer, K
Karas, D
Kel, AE
Kel-Margoulis, OV
Kloos, DU
Land, S
Lewicki-Potapov, B
Michael, H
Münch, R
Reuter, I
Rotert, S
Saxel, H
Scheer, M
Thiele, S
Wingender, E
[J]. NUCLEIC ACIDS RESEARCH, 2003, 31 (01) : 374 - 378
[10] The InterPro Database, 2003 brings increased coverage and new features
Mulder, NJ
Apweiler, R
Attwood, TK
Bairoch, A
Barrell, D
Bateman, A
Binns, D
Biswas, M
Bradley, P
Bork, P
Bucher, P
Copley, RR
Courcelle, E
Das, U
Durbin, R
Falquet, L
Fleischmann, W
Griffiths-Jones, S
Haft, D
Harte, N
Hulo, N
Kahn, D
Kanapin, A
Krestyaninova, M
Lopez, R
Letunic, I
Lonsdale, D
Silventoinen, V
Orchard, SE
Pagni, M
Peyruc, D
Ponting, CP
Selengut, JD
Servant, F
Sigrist, CJA
Vaughan, R
Zdobnov, EM
[J]. NUCLEIC ACIDS RESEARCH, 2003, 31 (01) : 315 - 318

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