InterProScan: protein domains identifier

被引:2267
作者
Quevillon, E [1 ]
Silventoinen, V [1 ]
Pillai, S [1 ]
Harte, N [1 ]
Mulder, N [1 ]
Apweiler, R [1 ]
Lopez, R [1 ]
机构
[1] EMBL Outstn, European Bioinformat Inst, Cambridge CB10 1SD, England
关键词
D O I
10.1093/nar/gki442
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
InterProScan [ E. M. Zdobnov and R. Apweiler ( 2001) Bioinformatics, 17, 847-848] is a tool that combines different protein signature recognition methods from the InterPro [N. J. Mulder, R. Apweiler, T. K. Attwood, A. Bairoch, A. Bateman, D. Binns, P. Bradley, P. Bork, P. Bucher, L. Cerutti et al. ( 2005) Nucleic Acids Res., 33, D201-D205] consortium member databases into one resource. At the time of writing there are 10 distinct publicly available databases in the application. Protein as well as DNA sequences can be analysed. A web-based version is accessible for academic and commercial organizations from the EBI (http://www.ebi.ac.uk/InterProScan/). In addition, a standalone Perl version and a SOAP Web Service [J. Snell, D. Tidwell and P. Kulchenko ( 2001) Programming Web Services with SOAP, 1st edn. O'Reilly Publishers, Sebastopol, CA, http://www.w3.org/TR/soap/] are also available to the users. Various output formats are supported and include text tables, XML documents, as well as various graphs to help interpret the results.
引用
收藏
页码:W116 / W120
页数:5
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