Solution NMR methods for quantitative identification of chemical exchange in 15N-labeled proteins

被引:52
作者
Wang, CY [1 ]
Palmer, AG [1 ]
机构
[1] Columbia Univ, Dept Biochem & Mol Biophys, New York, NY 10032 USA
关键词
chemical exchange; protein dynamics; cross correlation; TROSY; CPMG; transverse relaxation;
D O I
10.1002/mrc.1262
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Chemical exchange phenomena in NMR spectra reveal protein motions on microsecond to millisecond time scales that are associated with biological functions, including catalysis, ligand binding, allosteric conformational changes and protein folding. This review surveys solution NMR methods for identifying chemical exchange in proteins by measuring transverse relaxation rate constants for backbone N-15 spins. The relaxation-compensated-IzSz and in-phase Hahn echo methods are suitable for small- to medium-sized proteins. The transverse relaxation optimized spectroscopy method is suitable for large, deuterated proteins. Differential multiple quantum relaxation is also a signature of chemical exchange and provides unique information about exchange processes. The various methods are illustrated by application to basic pancreatic trypsin inhibitor and triosephosphate isomerase. Copyright (C) 2003 John Wiley Sons, Ltd.
引用
收藏
页码:866 / 876
页数:11
相关论文
共 66 条
[41]   IMPROVED RNA STRUCTURE DETERMINATION BY DETECTION OF NOE CONTACTS TO EXCHANGE-BROADENED AMINO PROTONS [J].
MUELLER, L ;
LEGAULT, P ;
PARDI, A .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1995, 117 (45) :11043-11048
[42]   Studying excited states of proteins by NMR spectroscopy [J].
Mulder, FAA ;
Mittermaier, A ;
Hon, B ;
Dahlquist, FW ;
Kay, LE .
NATURE STRUCTURAL BIOLOGY, 2001, 8 (11) :932-935
[43]   Measurement of J and dipolar couplings from simplified two-dimensional NMR spectra [J].
Ottiger, M ;
Delaglio, F ;
Bax, A .
JOURNAL OF MAGNETIC RESONANCE, 1998, 131 (02) :373-378
[44]   Nuclear magnetic resonance methods for quantifying microsecond-to-millisecond motions in biological macromolecules [J].
Palmer, AG ;
Kroenke, CD ;
Loria, JP .
NUCLEAR MAGNETIC RESONANCE OF BIOLOGICAL MACROMOLECULES, PT B, 2001, 339 :204-238
[45]   Nuclear magnetic resonance studies of biopolymer dynamics [J].
Palmer, AG ;
Williams, J ;
McDermott, A .
JOURNAL OF PHYSICAL CHEMISTRY, 1996, 100 (31) :13293-13310
[46]   Symmetrical reconversion: measuring cross-correlation rates with enhanced accuracy [J].
Pelupessy, P ;
Espallargas, GM ;
Bodenhausen, G .
JOURNAL OF MAGNETIC RESONANCE, 2003, 161 (02) :258-264
[47]   Correlated motions of successive amide N-H bonds in proteins [J].
Pelupessy, P ;
Ravindranathan, S ;
Bodenhausen, G .
JOURNAL OF BIOMOLECULAR NMR, 2003, 25 (04) :265-280
[48]  
Phan IQH, 1996, J BIOMOL NMR, V8, P369, DOI 10.1007/BF00228140
[50]  
RANCE M, 1983, J MAGN RESON, V67, P504