Quantitative exploration of the catalytic landscape separating divergent plant sesquiterpene synthases

被引:155
作者
O'Maille, Paul E. [1 ]
Malone, Arthur [1 ]
Dellas, Nikki [1 ,2 ]
Hess, B. Andes, Jr. [3 ]
Smentek, Lidia [3 ,4 ]
Sheehan, Iseult [1 ]
Greenhagen, Bryan T. [5 ]
Chappell, Joe [5 ]
Manning, Gerard [6 ]
Noel, Joseph P. [1 ]
机构
[1] Salk Inst Biol Studies, Howard Hughes Med Inst, Jack H Skirball Ctr Chem Biol & Prote, La Jolla, CA 92037 USA
[2] Univ Calif San Diego, Dept Chem, La Jolla, CA 92093 USA
[3] Vanderbilt Univ, Dept Chem, Nashville, TN 37235 USA
[4] Nicholas Copernicus Univ, Inst Phys, PL-87100 Torun, Poland
[5] Univ Kentucky, Dept Plant & Soil Sci, Plant Biol Program, Lexington, KY 40546 USA
[6] Salk Inst Biol Studies, Razavi Newman Ctr Bioinformat, La Jolla, CA 92037 USA
基金
美国国家卫生研究院;
关键词
D O I
10.1038/nchembio.113
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Throughout molecular evolution, organisms create assorted chemicals in response to varying ecological niches. Catalytic landscapes underlie metabolic evolution, wherein mutational steps alter the biosynthetic properties of enzymes. Here we report the first systematic quantitative characterization of the catalytic landscape underlying the evolution of sesquiterpene chemical diversity. On the basis of our previous discovery of a set of nine naturally occurring amino acid substitutions that functionally interconverted orthologous sesquiterpene synthases from Nicotiana tabacum and Hyoscyamus muticus, we created a library of all possible residue combinations (2(9) = 512) in the N. tabacum enzyme. The product spectra of 418 active enzymes revealed a rugged landscape where several minimal combinations of the nine mutations encode convergent solutions to the interconversions of parental activities. Quantitative comparisons indicated context dependence for mutational effects-epistasis-in product specificity and promiscuity. These results provide a measure of the mutational accessibility of phenotypic variability in a diverging lineage of terpene synthases.
引用
收藏
页码:617 / 623
页数:7
相关论文
共 34 条
[1]   Network of coupled promoting motions in enzyme catalysis [J].
Agarwal, PK ;
Billeter, SR ;
Rajagopalan, PTR ;
Benkovic, SJ ;
Hammes-Schiffer, S .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2002, 99 (05) :2794-2799
[2]   Plant sesquiterpenes induce hyphal branching in arbuscular mycorrhizal fungi [J].
Akiyama, K ;
Matsuzaki, K ;
Hayashi, H .
NATURE, 2005, 435 (7043) :824-827
[3]   Evolving biosynthetic tangos negotiate mechanistic landscapes [J].
Austin, Michael B. ;
O'Maille, Paul E. ;
Noel, Joseph P. .
NATURE CHEMICAL BIOLOGY, 2008, 4 (04) :217-222
[4]   Cloning and bacterial expression of sesquiterpene cyclase, a key branch point enzyme for the synthesis of sesquiterpenoid phytoalexin capsidiol in UV-challenged leaves of Capsicum annuum [J].
Back, KW ;
He, SL ;
Kim, KU ;
Shin, DH .
PLANT AND CELL PHYSIOLOGY, 1998, 39 (09) :899-904
[5]   Robustness-epistasis link shapes the fitness landscape of a randomly drifting protein [J].
Bershtein, Shimon ;
Segal, Michal ;
Bekerman, Roy ;
Tokuriki, Nobuhiko ;
Tawfik, Dan S. .
NATURE, 2006, 444 (7121) :929-932
[6]   Plant terpenoid synthases: Molecular biology and phylogenetic analysis [J].
Bohlmann, J ;
Meyer-Gauen, G ;
Croteau, R .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1998, 95 (08) :4126-4133
[7]   Enzymes with extra talents: moonlighting functions and catalytic promiscuity [J].
Copley, SD .
CURRENT OPINION IN CHEMICAL BIOLOGY, 2003, 7 (02) :265-272
[8]   (E)-β-ocimene and myrcene synthase genes of floral scent biosynthesis in snapdragon:: Function and expression of three terpene synthase genes of a new terpene synthase subfamily [J].
Dudareva, N ;
Martin, D ;
Kish, CM ;
Kolosova, N ;
Gorenstein, N ;
Fäldt, J ;
Miller, B ;
Bohlmann, J .
PLANT CELL, 2003, 15 (05) :1227-1241
[9]   GENE FAMILY FOR AN ELICITOR-INDUCED SESQUITERPENE CYCLASE IN TOBACCO [J].
FACCHINI, PJ ;
CHAPPELL, J .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1992, 89 (22) :11088-11092
[10]  
FEENY P, 1992, HERBIVORES THEIR INT