Biocatalysts by evolution

被引:92
作者
Jaeckel, Christian [1 ]
Hilvert, Donald [1 ]
机构
[1] Swiss Fed Inst Technol, Organ Chem Lab, CH-8093 Zurich, Switzerland
关键词
DIRECTED EVOLUTION; AMINO-ACIDS; SATURATION MUTAGENESIS; COMPUTATIONAL DESIGN; GENETIC SELECTION; ENZYME EVOLUTION; PROTEIN DESIGN; CONSENSUS; FAMILY; ENANTIOSELECTIVITY;
D O I
10.1016/j.copbio.2010.08.008
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Proteins evolve by iterative cycles of mutation, selection and amplification. Analogous evolutionary strategies are being profitably exploited in the laboratory to generate and optimize biocatalysts for diverse biotechnological applications. In this review, we summarize recent efforts to improve this process by creating more effective protein libraries and more efficient screening/selection schemes. Targeted mutagenesis using simplified amino acid alphabets, statistical analyses of sequence-function-stability relationships, and neutral mutational drift have emerged as powerful tools for generating useful molecular diversity, while new techniques for controlling selection stringency and microfluidic methods for screening large populations of molecules promise to facilitate exploration of sequence space. Enzyme engineers interested in creating novel biocatalysts for abiological reactions are sure to profit from these advances.
引用
收藏
页码:753 / 759
页数:7
相关论文
共 67 条
[1]   Ultrahigh-throughput screening in drop-based microfluidics for directed evolution [J].
Agresti, Jeremy J. ;
Antipov, Eugene ;
Abate, Adam R. ;
Ahn, Keunho ;
Rowat, Amy C. ;
Baret, Jean-Christophe ;
Marquez, Manuel ;
Klibanov, Alexander M. ;
Griffiths, Andrew D. ;
Weitz, David A. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2010, 107 (09) :4004-4009
[2]  
Amitai G, 2007, HFSP J, V1, P67, DOI [10.2976/1.2739115, 10.2976/1.2739115/10.2976/1]
[3]   Enzyme improvement in the absence of structural knowledge: a novel statistical approach [J].
Barak, Yoram ;
Nov, Yuval ;
Ackerley, David F. ;
Matin, A. .
ISME JOURNAL, 2008, 2 (02) :171-179
[4]   Fluorescence-activated droplet sorting (FADS): efficient microfluidic cell sorting based on enzymatic activity [J].
Baret, Jean-Christophe ;
Miller, Oliver J. ;
Taly, Valerie ;
Ryckelynck, Michael ;
El-Harrak, Abdeslam ;
Frenz, Lucas ;
Rick, Christian ;
Samuels, Michael L. ;
Hutchison, J. Brian ;
Agresti, Jeremy J. ;
Link, Darren R. ;
Weitz, David A. ;
Griffiths, Andrew D. .
LAB ON A CHIP, 2009, 9 (13) :1850-1858
[5]   Complete inversion of enantioselectivity towards acetylated tertiary alcohols by a double mutant of a Bacillus subtilis esterase [J].
Bartsch, Sebastian ;
Kourist, Robert ;
Bornscheuer, Uwe T. .
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2008, 47 (08) :1508-1511
[6]   Ohno's Model Revisited: Measuring the Frequency of Potentially Adaptive Mutations under Various Mutational Drifts [J].
Bershtein, Shimon ;
Tawfik, Dan S. .
MOLECULAR BIOLOGY AND EVOLUTION, 2008, 25 (11) :2311-2318
[7]   Intense neutral drifts yield robust and evolvable consensus proteins [J].
Bershtein, Shimon ;
Goldin, Korina ;
Tawfik, Dan S. .
JOURNAL OF MOLECULAR BIOLOGY, 2008, 379 (05) :1029-1044
[8]   Neutral genetic drift can alter promiscuous protein functions, potentially aiding functional evolution [J].
Bloom, Jesse D. ;
Romero, Philip A. ;
Lu, Zhongyi ;
Arnold, Frances H. .
BIOLOGY DIRECT, 2007, 2
[9]   Evolution favors protein mutational robustness in sufficiently large populations [J].
Bloom, Jesse D. ;
Lu, Zhongyi ;
Chen, David ;
Raval, Alpan ;
Venturelli, Ophelia S. ;
Arnold, Frances H. .
BMC BIOLOGY, 2007, 5
[10]   Inferring Stabilizing Mutations from Protein Phylogenies: Application to Influenza Hemagglutinin [J].
Bloom, Jesse D. ;
Glassman, Matthew J. .
PLOS COMPUTATIONAL BIOLOGY, 2009, 5 (04)