NMR methods for studying quadruplex nucleic acids

被引:108
作者
da Silva, Mateus Webba [1 ]
机构
[1] Univ Ulster, Sch Biomed Sci, Coleraine BT52 1SA, Londonderry, North Ireland
关键词
NMR; quadruplexes; trans-hydrogen bonds; residual dipolar couplings; dynamics; structure calculation;
D O I
10.1016/j.ymeth.2007.05.007
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Solution NMR spectroscopy has traditionally played a central role in examining quadruplex structure, dynamics, and interactions. Here, an overview is given of the methods currently applied to structural, dynamics, thermodynamics, and kinetics studies of nucleic acid quadruplexes and associated cations. (c) 2007 Elsevier Inc. All rights reserved.
引用
收藏
页码:264 / 277
页数:14
相关论文
共 132 条
[121]   Determination of the glycosidic torsion angles in uniformly 13C-labeled nucleic acids from vicinal coupling constants 3JC2/4-H1′ and 3JC6/8-H1′ [J].
Trantírek, L ;
Stefl, R ;
Masse, JE ;
Feigon, J ;
Sklenár, V .
JOURNAL OF BIOMOLECULAR NMR, 2002, 23 (01) :1-12
[122]   Cleavage of telomeric G-quadruplex DNA with perylene-EDTA•Fe(II) [J].
Tuntiwechapikul, W ;
Salazar, M .
BIOCHEMISTRY, 2001, 40 (45) :13652-13658
[123]   Determination of the number and location of the manganese binding sites of DNA quadruplexes in solution by EPR and NMR in the presence and absence of thrombin [J].
Wang, KY ;
Kumar, S ;
Pham, TQ ;
Marathias, VM ;
Swaminathan, S ;
Bolton, PH .
JOURNAL OF MOLECULAR BIOLOGY, 1996, 260 (03) :378-394
[124]   The use of NMR methods for conformational studies of nucleic acids [J].
Wijmenga, SS ;
van Buuren, BNM .
PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY, 1998, 32 :287-387
[125]  
WIJMENGA SS, 1993, NMR MACROMOLECULES P, P217
[126]   Direct identification of NH•••N hydrogen bonds in non-canonical base pairs of RNA by NMR spectroscopy [J].
Wöhnert, J ;
Dingley, AJ ;
Stoldt, M ;
Görlach, M ;
Grzesiek, S ;
Brown, LR .
NUCLEIC ACIDS RESEARCH, 1999, 27 (15) :3104-3110
[127]   Direct NMR detection of the "invisible" alkali metal cations tightly bound to G-quadruplex structures [J].
Wong, A ;
Ida, R ;
Wu, G .
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 2005, 337 (01) :363-366
[128]  
Wuthrich K., 1986, NMR PROTEINS NUCL AC
[129]   A comprehensive approach for accurate measurement of proton-proton coupling constants in the sugar ring of DNA [J].
Yang, JP ;
McAteer, K ;
Silks, LA ;
Wu, RL ;
Isern, NG ;
Unkefer, CJ ;
Kennedy, MA .
JOURNAL OF MAGNETIC RESONANCE, 2000, 146 (02) :260-276
[130]   (3+1) assembly of three human telomeric repeats into an asymmetric dimeric G-quadruplex [J].
Zhang, N ;
Phan, AT ;
Patel, DJ .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2005, 127 (49) :17277-17285