The TCT motif, a key component of an RNA polymerase II transcription system for the translational machinery

被引:91
作者
Parry, Trevor J. [1 ]
Theisen, Joshua W. M. [1 ]
Hsu, Jer-Yuan [1 ]
Wang, Yuan-Liang [1 ]
Corcoran, David L. [2 ]
Eustice, Moriah [1 ]
Ohler, Uwe [2 ,3 ,4 ]
Kadonaga, James T. [1 ]
机构
[1] Univ Calif San Diego, Mol Biol Sect, La Jolla, CA 92093 USA
[2] Duke Univ, Med Ctr, Inst Genome Sci & Policy, Durham, NC 27708 USA
[3] Duke Univ, Med Ctr, Dept Biostat & Bioinformat, Durham, NC 27708 USA
[4] Duke Univ, Med Ctr, Dept Comp Sci, Durham, NC 27708 USA
基金
美国国家卫生研究院;
关键词
RNA polymerase II; core promoter; TFIID; ribosomal protein genes; BASAL TRANSCRIPTION; PROMOTER ELEMENT; INITIATOR; TATA; BINDING; DOWNSTREAM; GENE; RECOGNITION; TAFS;
D O I
10.1101/gad.1951110
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
The TCT motif (polypyrimidine initiator) encompasses the transcription start site of nearly all ribosomal protein genes in Drosophila and mammals. The TCT motif is required for transcription of ribosomal protein gene promoters. The TCT element resembles the Inr (initiator), but is not recognized by TFIID and cannot function in lieu of an Inr. However, a single T-to-A substitution converts the TCT element into a functionally active Inr. Thus, the TCT motif is a novel transcriptional element that is distinct from the Inr. These findings reveal a specialized TCT-based transcription system that is directed toward the synthesis of ribosomal proteins.
引用
收藏
页码:2013 / 2018
页数:6
相关论文
共 33 条
[21]  
Ni T, 2010, NAT METHODS, V7, P521, DOI [10.1038/NMETH.1464, 10.1038/nmeth.1464]
[22]  
Ohler U., 2002, GENOME BIOL, DOI [DOI 10.1186/GB-2002-3-12-RESEARCH0087, 10.1186/gb-2002-3-12-research0087]
[23]   Promoting developmental transcription [J].
Ohler, Uwe ;
Wassarman, David A. .
DEVELOPMENT, 2010, 137 (01) :15-26
[24]   The architecture of mammalian ribosomal protein promoters [J].
Perry, RP .
BMC EVOLUTIONARY BIOLOGY, 2005, 5 (1)
[25]   TFIID SEQUENCE RECOGNITION OF THE INITIATOR AND SEQUENCES FARTHER DOWNSTREAM IN DROSOPHILA CLASS-II GENES [J].
PURNELL, BA ;
EMANUEL, PA ;
GILMOUR, DS .
GENES & DEVELOPMENT, 1994, 8 (07) :830-842
[26]   Identification of highly specific localized sequence motifs in human ribosomal protein gene promoters [J].
Roepcke, S ;
Zhi, DG ;
Vingron, M ;
Arndt, PF .
GENE, 2006, 365 :48-56
[27]   SEQUENCE LOGOS - A NEW WAY TO DISPLAY CONSENSUS SEQUENCES [J].
SCHNEIDER, TD ;
STEPHENS, RM .
NUCLEIC ACIDS RESEARCH, 1990, 18 (20) :6097-6100
[28]   The RNA polymerase II core promoter [J].
Smale, ST ;
Kadonaga, JT .
ANNUAL REVIEW OF BIOCHEMISTRY, 2003, 72 :449-479
[29]   INVITRO TRANSCRIPTION OF THE DROSOPHILA-ENGRAILED GENE [J].
SOELLER, WC ;
POOLE, SJ ;
KORNBERG, T .
GENES & DEVELOPMENT, 1988, 2 (01) :68-81
[30]   Three Key Subregions Contribute to the Function of the Downstream RNA Polymerase II Core Promoter [J].
Theisen, Joshua W. M. ;
Lim, Chin Yan ;
Kadonaga, James T. .
MOLECULAR AND CELLULAR BIOLOGY, 2010, 30 (14) :3471-3479