The SBASE protein domain library, release 8.0: a collection of annotated protein sequence segments

被引：25

作者：

Murvai, J

Vlahovicek, K

Barta, E

Pongor, S

机构：

[1] Int Ctr Genet Engn & Biotechnol, I-34012 Trieste, Italy

[2] ABC, Inst Biochem & Prot Res, H-2100 Godollo, Hungary

来源：

NUCLEIC ACIDS RESEARCH | 2001年 / 29卷 / 01期

关键词：

D O I：

10.1093/nar/29.1.58

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

SBASE 8.0 is the eighth release of the SBASE library of protein domain sequences that contains 294 898 annotated structural, functional, ligand-binding and topogenic segments of proteins, cross-referenced to most major sequence databases and sequence pattern collections. The entries are clustered into over 2005 statistically validated domain groups (SBASE-A) and 595 non-validated groups (SBASE-B), provided with several WWW-based search and browsing facilities for online use. A domain-search facility was developed, based on non-parametric pattern recognition methods, including artificial neural networks. SBASE 8.0 is freely available by anonymous 'ftp' file transfer from ftp.icgeb.trieste.it. Automated searching of SBASE can be carried out with the WWW servers http://www.icgeb.trieste.it/ sbase/ and http://sbase.abc.hu/sbase/.

引用

页码：58 / 60

页数：3

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