Long noncoding RNAs in cell biology

被引:328
作者
Clark, Michael B. [1 ]
Mattick, John S. [1 ]
机构
[1] Univ Queensland, Inst Mol Biosci, St Lucia, Qld 4072, Australia
基金
澳大利亚研究理事会;
关键词
Trafficking; Paraspeckles; Localization; Nucleus; Cytoplasm; Neurons; Development; NEURONAL BC1 RNA; GENOME-WIDE IDENTIFICATION; MEIOTIC REGULATOR MEI2P; REPEAT-CONTAINING RNA; MESSENGER-RNA; GENE-EXPRESSION; ANTISENSE RNA; X-CHROMOSOME; POLY(A)-BINDING PROTEIN; DENDRITIC LOCATION;
D O I
10.1016/j.semcdb.2011.01.001
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
Whole genome transcriptomic analyses have identified large numbers of dynamically expressed long non-protein-coding RNAs (lncRNAs) in mammals and other animals whose functions are, as yet, largely unknown. Here we summarize the growing evidence that lncRNAs, like mRNAs, can be trafficked to and function in a wide variety of subcellular locations. Investigation of the subcellular distribution of lncRNAs has the potential to greatly expand our knowledge not only of the function of lncRNAs but also of cell biology by identifying previously unknown subcellular structures and novel constituents of known cellular organelles. (C) 2011 Elsevier Ltd. All rights reserved.
引用
收藏
页码:366 / 376
页数:11
相关论文
共 178 条
[1]   Noncoding transcription controls downstream promoters to regulate T-cell receptor α recombination [J].
Abarrategui, Iratxe ;
Krangel, Michael S. .
EMBO JOURNAL, 2007, 26 (20) :4380-4390
[2]   Identification and characterization of the Xlsirt cis-acting RNA localization element [J].
Allen, L ;
Kloc, M ;
Etkin, LD .
DIFFERENTIATION, 2003, 71 (06) :311-321
[3]   Noncoding RNA in development [J].
Amaral, Paulo P. ;
Mattick, John S. .
MAMMALIAN GENOME, 2008, 19 (7-8) :454-492
[4]   Intergenic transcription and transinduction of the human beta-globin locus [J].
Ashe, HL ;
Monks, J ;
Wijgerde, M ;
Fraser, P ;
Proudfoot, NJ .
GENES & DEVELOPMENT, 1997, 11 (19) :2494-2509
[5]   Telomeric repeat-containing RNA and RNA surveillance factors at mammalian chromosome ends [J].
Azzalin, Claus M. ;
Reichenbach, Patrick ;
Khoriauli, Lela ;
Giulotto, Elena ;
Lingner, Joachim .
SCIENCE, 2007, 318 (5851) :798-801
[6]   A natural antisense transcript regulates Zeb2/Sip1 gene expression during Snail1-induced epithelial-mesenchymal transition [J].
Beltran, Manuel ;
Puig, Isabel ;
Pena, Cristina ;
Miguel Garcia, Jose ;
Belen Alvarez, Ana ;
Pena, Raul ;
Bonilla, Felix ;
Garcia de Herreros, Antonio .
GENES & DEVELOPMENT, 2008, 22 (06) :756-769
[7]   A long nuclear-retained non-coding RNA regulates synaptogenesis by modulating gene expression [J].
Bernard, Delphine ;
Prasanth, Kannanganattu V. ;
Tripathi, Vidisha ;
Colasse, Sabrina ;
Nakamura, Tetsuya ;
Xuan, Zhenyu ;
Zhang, Michael Q. ;
Sedel, Frederic ;
Jourdren, Laurent ;
Coulpier, Fanny ;
Triller, Antoine ;
Spector, David L. ;
Bessis, Alain .
EMBO JOURNAL, 2010, 29 (18) :3082-3093
[8]   Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project [J].
Birney, Ewan ;
Stamatoyannopoulos, John A. ;
Dutta, Anindya ;
Guigo, Roderic ;
Gingeras, Thomas R. ;
Margulies, Elliott H. ;
Weng, Zhiping ;
Snyder, Michael ;
Dermitzakis, Emmanouil T. ;
Stamatoyannopoulos, John A. ;
Thurman, Robert E. ;
Kuehn, Michael S. ;
Taylor, Christopher M. ;
Neph, Shane ;
Koch, Christoph M. ;
Asthana, Saurabh ;
Malhotra, Ankit ;
Adzhubei, Ivan ;
Greenbaum, Jason A. ;
Andrews, Robert M. ;
Flicek, Paul ;
Boyle, Patrick J. ;
Cao, Hua ;
Carter, Nigel P. ;
Clelland, Gayle K. ;
Davis, Sean ;
Day, Nathan ;
Dhami, Pawandeep ;
Dillon, Shane C. ;
Dorschner, Michael O. ;
Fiegler, Heike ;
Giresi, Paul G. ;
Goldy, Jeff ;
Hawrylycz, Michael ;
Haydock, Andrew ;
Humbert, Richard ;
James, Keith D. ;
Johnson, Brett E. ;
Johnson, Ericka M. ;
Frum, Tristan T. ;
Rosenzweig, Elizabeth R. ;
Karnani, Neerja ;
Lee, Kirsten ;
Lefebvre, Gregory C. ;
Navas, Patrick A. ;
Neri, Fidencio ;
Parker, Stephen C. J. ;
Sabo, Peter J. ;
Sandstrom, Richard ;
Shafer, Anthony .
NATURE, 2007, 447 (7146) :799-816
[9]   Genomic analysis of mouse retinal development [J].
Blackshaw, S ;
Harpavat, S ;
Trimarchi, J ;
Cai, L ;
Huang, HY ;
Kuo, WP ;
Weber, G ;
Lee, K ;
Fraioli, RE ;
Cho, SH ;
Yung, R ;
Asch, E ;
Ohno-Machado, L ;
Wong, WH ;
Cepko, CL .
PLOS BIOLOGY, 2004, 2 (09) :1411-1431
[10]   Paraspeckles: nuclear bodies built on long noncoding RNA [J].
Bond, Charles S. ;
Fox, Archa H. .
JOURNAL OF CELL BIOLOGY, 2009, 186 (05) :637-644