Conformation of heparin studied with macromolecular hydrodynamic methods and X-ray scattering

被引:97
作者
Pavlov, G
Finet, S
Tatarenko, K
Korneeva, E
Ebel, C
机构
[1] UJF, Inst Biol Struct, Mol Biophys Lab, CEA,CNRS,UMR 5075, F-38027 Grenoble, France
[2] St Petersburg State Univ, Inst Phys, St Petersburg 198504, Russia
[3] European Synchrotron Radiat Facil, F-38043 Grenoble, France
[4] Russian Acad Sci, Inst Macromol Cpds, St Petersburg 199004, Russia
来源
EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS | 2003年 / 32卷 / 05期
关键词
heparin; hydrodynamic characteristics; X-ray scattering;
D O I
10.1007/s00249-003-0316-9
中图分类号
Q6 [生物物理学];
学科分类号
071011 ;
摘要
The hydrodynamic characteristics of heparin fractions in a 0.2 M NaCl solution have been determined. Experimental values varied over the following ranges: the sedimentation coefficient (at 20.0degreesC), 1.3 < (s0) x 10(13) < 3.2 s; the Gralen coefficient (sedimentation concentration-dependence parameter), 10 < k(s) <70 cm(3) g(-1); the translational diffusion coefficient, 3.9 < D-0 x 10(7) < 15.4 cm(2) s(-1); the intrinsic viscosity, 7.9 < [η] < 40 cm(3) g(-1). Combination of s(0) with D-0 using the Svedberg equation yielded molecular weights in the range 3.9 < M x 10(-3) < 37 g mol(-1). The value of the mass per unit length of the heparin molecule, M-L, was determined using the theory of hydrodynamic properties of a weakly bending rod, giving M-L = 570 +/- 50 g nm(-1) mol(-1). The equilibrium rigidity, Kuhn segment length (A = 9 +/- 12 nm) and hydrodynamic diameter (d = 0.94 +/- 0.1 nm) of heparin were evaluated on the basis of the worm-like coil theory without the excluded volume effect, using the combination of hydrodynamic data obtained from fractions of different sizes. Small-angle X-ray scattering for three heparin fractions allowed an estimate for the cross-sectional radius of gyration as 0.43 nm; from the evolution with the macromolecule contour length of the radius of gyration, a value for the Kuhn segment length of 9 +/-1 nm was obtained. A good correlation is thus observed for the conformational parameters of heparin from hydrodynamic and X-ray scattering data. These values describe heparin as a semirigid polymer, with an equilibrium rigidity that is essentially determined by a structural component, the electrostatic contribution being negligible in 0.2 M NaCl.
引用
收藏
页码:437 / 449
页数:13
相关论文
共 67 条
[1]  
[Anonymous], 1989, RIGID CHAIN POLYM
[2]  
[Anonymous], 1980, BIOPHYS CHEM
[3]   POLYURONIDES - THEIR MOLECULAR ARCHITECTURE [J].
ATKINS, EDT ;
ISAAC, DH ;
NIEDUSZY.IA ;
PHELPS, CF ;
SHEEHAN, JK .
POLYMER, 1974, 15 (05) :263-271
[4]  
BARLOW GH, 1961, ARCH BIOCHEM BIOPHYS, V84, P518
[5]  
Barrat JL, 1996, ADV CHEM PHYS, V94, P1, DOI 10.1002/9780470141533.ch1
[6]  
Benoit H., 1953, J PHYS CHEM, V57, P958
[7]   TRANSLATIONAL DIFFUSION CONSTANT OF A RANDOM COIL [J].
BROERSMA, S .
JOURNAL OF CHEMICAL PHYSICS, 1969, 51 (01) :233-&
[8]  
BUSHIN SV, 1981, VYSOKOMOL SOEDIN A+, V23, P2494
[9]   Structure and biological interactions of heparin and heparan sulfate [J].
Casu, B ;
Lindahl, U .
ADVANCES IN CARBOHYDRATE CHEMISTRY AND BIOCHEMISTRY, VOL 57, 2001, 57 :159-206
[10]   CONFORMATIONAL FLEXIBILITY - A NEW CONCEPT FOR EXPLAINING BINDING AND BIOLOGICAL PROPERTIES OF IDURONIC ACID-CONTAINING GLYCOSAMINOGLYCANS [J].
CASU, B ;
PETITOU, M ;
PROVASOLI, M ;
SINAY, P .
TRENDS IN BIOCHEMICAL SCIENCES, 1988, 13 (06) :221-225