Conformation of heparin studied with macromolecular hydrodynamic methods and X-ray scattering

被引:97
作者
Pavlov, G
Finet, S
Tatarenko, K
Korneeva, E
Ebel, C
机构
[1] UJF, Inst Biol Struct, Mol Biophys Lab, CEA,CNRS,UMR 5075, F-38027 Grenoble, France
[2] St Petersburg State Univ, Inst Phys, St Petersburg 198504, Russia
[3] European Synchrotron Radiat Facil, F-38043 Grenoble, France
[4] Russian Acad Sci, Inst Macromol Cpds, St Petersburg 199004, Russia
来源
EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS | 2003年 / 32卷 / 05期
关键词
heparin; hydrodynamic characteristics; X-ray scattering;
D O I
10.1007/s00249-003-0316-9
中图分类号
Q6 [生物物理学];
学科分类号
071011 ;
摘要
The hydrodynamic characteristics of heparin fractions in a 0.2 M NaCl solution have been determined. Experimental values varied over the following ranges: the sedimentation coefficient (at 20.0degreesC), 1.3 < (s0) x 10(13) < 3.2 s; the Gralen coefficient (sedimentation concentration-dependence parameter), 10 < k(s) <70 cm(3) g(-1); the translational diffusion coefficient, 3.9 < D-0 x 10(7) < 15.4 cm(2) s(-1); the intrinsic viscosity, 7.9 < [η] < 40 cm(3) g(-1). Combination of s(0) with D-0 using the Svedberg equation yielded molecular weights in the range 3.9 < M x 10(-3) < 37 g mol(-1). The value of the mass per unit length of the heparin molecule, M-L, was determined using the theory of hydrodynamic properties of a weakly bending rod, giving M-L = 570 +/- 50 g nm(-1) mol(-1). The equilibrium rigidity, Kuhn segment length (A = 9 +/- 12 nm) and hydrodynamic diameter (d = 0.94 +/- 0.1 nm) of heparin were evaluated on the basis of the worm-like coil theory without the excluded volume effect, using the combination of hydrodynamic data obtained from fractions of different sizes. Small-angle X-ray scattering for three heparin fractions allowed an estimate for the cross-sectional radius of gyration as 0.43 nm; from the evolution with the macromolecule contour length of the radius of gyration, a value for the Kuhn segment length of 9 +/-1 nm was obtained. A good correlation is thus observed for the conformational parameters of heparin from hydrodynamic and X-ray scattering data. These values describe heparin as a semirigid polymer, with an equilibrium rigidity that is essentially determined by a structural component, the electrostatic contribution being negligible in 0.2 M NaCl.
引用
收藏
页码:437 / 449
页数:13
相关论文
共 67 条
[51]  
Pavlov GM, 1999, PROG COLL POL SCI S, V113, P76
[52]   CONTROVERSIAL GLYCOSAMINOGLYCAN CONFORMATIONS [J].
REES, DA ;
MORRIS, ER ;
STODDART, JF ;
STEVENS, ES .
NATURE, 1985, 317 (6037) :480-480
[53]   Non-ideality by sedimentation velocity of halophilic malate dehydrogenase in complex solvents [J].
Solovyova, A ;
Schuck, P ;
Costenaro, L ;
Ebel, C .
BIOPHYSICAL JOURNAL, 2001, 81 (04) :1868-1880
[54]   Heparan sulfate: Anchor for viral intruders? [J].
Spillmann, D .
BIOCHIMIE, 2001, 83 (08) :811-817
[55]   PHYSICO-CHEMICAL STUDIES OF FRACTIONATED BOVINE HEPARIN .V. SOME LOW-ANGLE X-RAY SCATTERING DATA [J].
STIVALA, SS ;
HERBST, M ;
KRATKY, O ;
PILZ, I .
ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS, 1968, 127 (1-3) :795-&
[56]   Recent advances in the study of the biosynthesis and functions of sulfated glycosaminoglycans [J].
Sugahara, K ;
Kitagawa, H .
CURRENT OPINION IN STRUCTURAL BIOLOGY, 2000, 10 (05) :518-527
[57]  
Svedberg T., 1940, THE ULTRACENTRIFUGE
[58]  
Tanford C., 1961, PHYS CHEM MACROMOLEC
[59]  
Theisen A., 2000, Refractive Increment Data-Book for Polymer and Biomolecular Scientists
[60]  
Tsvetkov V. N., 1970, STRUCTURE MACROMOLEC