Drugs from hidden bugs: their discovery via untapped resources

被引:34
作者
Lefevre, Fabrice [1 ]
Robe, Patrick [1 ]
Jarrin, Cyrille [1 ]
Ginolhac, Aurelien [1 ]
Zago, Caroline [1 ]
Auriol, Daniel [1 ]
Vogel, Timothy M. [2 ]
Simonet, Pascal [2 ]
Nalin, Renaud [1 ]
机构
[1] LibraGen, F-31400 Toulouse, France
[2] Ecole Cent Lyon, Lab Ampere, Environm Microbial Genom Grp, CNRS,UMR 5005, F-69134 Ecully, France
关键词
metagenomics; environmental DNA extraction; drug discovery; high throughput screening;
D O I
10.1016/j.resmic.2007.12.011
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
The drug discovery process is a starving machine requiring constant feeding with new chemical compounds. Synthetic or natural scaffolds: what are the best sources? While synthetic molecules are rapidly generated by combinatorial chemistry, they show lower chemical diversity than their natural counterparts. A significant fraction of known natural products is issued from microbial secondary metabolism; however, more than 95% of bacterial organisms remain unexploited as a source of active chemical compounds due to their cultivation difficulties. Recent technological advances in metagenomics have provided reliable access to chemicals of these hidden bugs, thus opening up new opportunities for feeding the machine. (C) 2008 Elsevier Masson SAS. All rights reserved.
引用
收藏
页码:153 / 161
页数:9
相关论文
共 59 条
[1]   PHYLOGENETIC IDENTIFICATION AND IN-SITU DETECTION OF INDIVIDUAL MICROBIAL-CELLS WITHOUT CULTIVATION [J].
AMANN, RI ;
LUDWIG, W ;
SCHLEIFER, KH .
MICROBIOLOGICAL REVIEWS, 1995, 59 (01) :143-169
[2]   Construction and analysis of bacterial artificial chromosome libraries from a marine microbial assemblage [J].
Béjà, O ;
Suzuki, MT ;
Koonin, EV ;
Aravind, L ;
Hadd, A ;
Nguyen, LP ;
Villacorta, R ;
Amjadi, M ;
Garrigues, C ;
Jovanovich, SB ;
Feldman, RA ;
DeLong, EF .
ENVIRONMENTAL MICROBIOLOGY, 2000, 2 (05) :516-529
[3]   Bioactive microbial metabolites -: A personal view [J].
Bérdy, J .
JOURNAL OF ANTIBIOTICS, 2005, 58 (01) :1-26
[4]   High molecular weight DNA recovery from soils prerequisite for biotechnological metagenomic library construction [J].
Bertrand, H ;
Poly, F ;
Van, VT ;
Lombard, N ;
Nalin, R ;
Vogel, TM ;
Simonet, P .
JOURNAL OF MICROBIOLOGICAL METHODS, 2005, 62 (01) :1-11
[5]   Microbial communities in the human small intestine: coupling diversity to metagenomics [J].
Booijink, Carien C. G. M. ;
Zoetendal, Erwin G. ;
Kleerebezem, Michiel ;
de Vos, Willem M. .
FUTURE MICROBIOLOGY, 2007, 2 (03) :285-295
[6]   Increased mucosal tumour necrosis factor α production in Crohn's disease can be downregulated ex vivo by probiotic bacteria [J].
Borruel, N ;
Carol, M ;
Casellas, F ;
Antolín, M ;
de Lara, F ;
Espín, E ;
Naval, J ;
Guarner, F ;
Malagelada, JR .
GUT, 2002, 51 (05) :659-664
[7]   Long-chain N-acyl amino acid antibiotics isolated from heterologously expressed environmental DNA [J].
Brady, SF ;
Clardy, J .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2000, 122 (51) :12903-12904
[8]   Palmitoylputrescine, an antibiotic isolated from the heterologous expression of DNA extracted from bromeliad tank water [J].
Brady, SF ;
Clardy, J .
JOURNAL OF NATURAL PRODUCTS, 2004, 67 (08) :1283-1286
[9]   Bacteria-induced intestinal cancer in mice with disrupted Gpx1 and Gpx2 genes [J].
Chu, FF ;
Esworthy, RS ;
Chu, PG ;
Longmate, JA ;
Huycke, MM ;
Wilczynski, S ;
Doroshow, JH .
CANCER RESEARCH, 2004, 64 (03) :962-968
[10]   New antibiotics from bacterial natural products [J].
Clardy, Jon ;
Fischbach, Michael A. ;
Walsh, Christopher T. .
NATURE BIOTECHNOLOGY, 2006, 24 (12) :1541-1550