Structure of the human 80S ribosome

被引:378
作者
Khatter, Heena [1 ,2 ,3 ,4 ]
Myasnikov, Alexander G. [1 ,2 ,3 ,4 ]
Natchiar, S. Kundhavai [1 ,2 ,3 ,4 ]
Klaholz, Bruno P. [1 ,2 ,3 ,4 ]
机构
[1] IGBMC Inst Genet & Mol & Cellular Biol, Dept Integrated Struct Biol, Ctr Integrat Biol CBI, F-67404 Illkirch Graffenstaden, France
[2] CNRS, UMR 7104, F-67404 Illkirch Graffenstaden, France
[3] INSERM, U964, F-67404 Illkirch Graffenstaden, France
[4] Univ Strasbourg, F-67081 Strasbourg, France
基金
欧洲研究理事会;
关键词
PARTICLE ELECTRON CRYOMICROSCOPY; TRANSFER-RNA BINDING; O HYDROGEN-BONDS; ANGSTROM RESOLUTION; CRYSTAL-STRUCTURE; EUKARYOTIC RIBOSOME; TRANSLATION INITIATION; BACTERIAL RIBOSOME; MESSENGER-RNA; L1; STALK;
D O I
10.1038/nature14427
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Ribosomes are translational machineries that catalyse protein synthesis. Ribosome structures from various species are known at the atomic level, but obtaining the structure of the human ribosome has remained a challenge; efforts to address this would be highly relevant with regard to human diseases. Here we report the near-atomic structure of the human ribosome derived from high-resolution single-particle cryo-eiecfron microscopy and atomic model, building. The structure has an average resolution of 3.6 angstrom, reaching 2.9 angstrom resolution in the most stable regions. It provides unprecedented insights into ribosomal RNA entities and amino acid side chains, notably of the transfer RNA binding sites and specific molecular interactions with the exit site tRINA. It reveals atomic details of the subunit interface, which is seen to remodel strongly upon rotational movements of the ribosomal submits. Furthermore, the structure paves the way for analysing antibiotic side effects and diseases associated with deregulated protein synthesis.
引用
收藏
页码:640 / U338
页数:16
相关论文
共 59 条
[1]   FEM: feature-enhanced map [J].
Afonine, Pavel V. ;
Moriarty, Nigel W. ;
Mustyakimov, Marat ;
Sobolev, Oleg V. ;
Terwilliger, Thomas C. ;
Turk, Dusan ;
Urzhumtsev, Alexandre ;
Adams, Paul D. .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2015, 71 :646-666
[2]   Towards automated crystallographic structure refinement with phenix.refine [J].
Afonine, Pavel V. ;
Grosse-Kunstleve, Ralf W. ;
Echols, Nathaniel ;
Headd, Jeffrey J. ;
Moriarty, Nigel W. ;
Mustyakimov, Marat ;
Terwilliger, Thomas C. ;
Urzhumtsev, Alexandre ;
Zwart, Peter H. ;
Adams, Paul D. .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2012, 68 :352-367
[3]   Structure of the Yeast Mitochondrial Large Ribosomal Subunit [J].
Amunts, Alexey ;
Brown, Alan ;
Bai, Xiao-chen ;
Llacer, Jose L. ;
Hussain, Tanweer ;
Emsley, Paul ;
Long, Fei ;
Murshudov, Garib ;
Scheres, Sjors H. W. ;
Ramakrishnan, V. .
SCIENCE, 2014, 343 (6178) :1485-1489
[4]   Structures of the human and Drosophila 80S ribosome [J].
Anger, Andreas M. ;
Armache, Jean-Paul ;
Berninghausen, Otto ;
Habeck, Michael ;
Subklewe, Marion ;
Wilson, Daniel N. ;
Beckmann, Roland .
NATURE, 2013, 497 (7447) :80-+
[5]   Ribosome structures to near-atomic resolution from thirty thousand cryo-EM particles [J].
Bai, Xiao-chen ;
Fernandez, Israel S. ;
McMullan, Greg ;
Scheres, Sjors H. W. .
ELIFE, 2013, 2
[6]   A new system for naming ribosomal proteins [J].
Ban, Nenad ;
Beckmann, Roland ;
Cate, Jamie H. D. ;
Dinman, Jonathan D. ;
Dragon, Francois ;
Ellis, Steven R. ;
Lafontaine, Denis L. J. ;
Lindahl, Lasse ;
Liljas, Anders ;
Lipton, Jeffrey M. ;
McAlear, Michael A. ;
Moore, Peter B. ;
Noller, Harry F. ;
Ortega, Joaquin ;
Panse, Vikram Govind ;
Ramakrishnan, V. ;
Spahn, Christian M. T. ;
Steitz, Thomas A. ;
Tchorzewski, Marek ;
Tollervey, David ;
Warren, Alan J. ;
Williamson, James R. ;
Wilson, Daniel ;
Yonath, Ada ;
Yusupov, Marat .
CURRENT OPINION IN STRUCTURAL BIOLOGY, 2014, 24 :165-169
[7]   The Structure of the Eukaryotic Ribosome at 3.0 Å Resolution [J].
Ben-Shem, Adam ;
de Loubresse, Nicolas Garreau ;
Melnikov, Sergey ;
Jenner, Lasse ;
Yusupova, Gulnara ;
Yusupov, Marat .
SCIENCE, 2011, 334 (6062) :1524-1529
[8]   Crystal Structure of the Eukaryotic Ribosome [J].
Ben-Shem, Adam ;
Jenner, Lasse ;
Yusupova, Gulnara ;
Yusupov, Marat .
SCIENCE, 2010, 330 (6008) :1203-1209
[9]   Structure of the hepatitis C virus IRES bound to the human 80S ribosome: Remodeling of the HCVIRES [J].
Boehringer, D ;
Thermann, R ;
Ostareck-Lederer, A ;
Lewis, JD ;
Stark, H .
STRUCTURE, 2005, 13 (11) :1695-1706
[10]   Structure of the large ribosomal subunit from human mitochondria [J].
Brown, Alan ;
Amunts, Alexey ;
Bai, Xiao-chen ;
Sugimoto, Yoichiro ;
Edwards, Patricia C. ;
Murshudov, Garib ;
Scheres, Sjors H. W. ;
Ramakrishnan, V. .
SCIENCE, 2014, 346 (6210) :718-722