Substrates of DNA polymerases with planar conformation of sugar: model of substrate transition state?

被引:8
作者
Krayevsky, AA
Watanabe, KA
机构
[1] Russian Acad Sci, Engelhardt Inst Mol Biol, Moscow 117984, Russia
[2] Codon Pharmaceut Inc, Gaithersburg, MD 20877 USA
来源
NUCLEOSIDES & NUCLEOTIDES | 1998年 / 17卷 / 07期
关键词
D O I
10.1080/07328319808004228
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Several years ago, we published an hypothesis concerning conformation of the glycone moiety of different substrates in active centers of several DNA metabolizing enzymes (Nucleosides & Nucleotides 1993, 12, 649-670). This hypothesis prompted us to further study the subtle conformational changes on substrates of DNA polymerases. Data collected in our, as well as other laboratories, have been analyzed, and models of active centers of different DNA polymerases are discussed below. Based on the model of substrate requirements, we now can divide DNA polymerases into two distinguished classes.
引用
收藏
页码:1153 / 1162
页数:10
相关论文
共 36 条
[21]   1-(2,3-DIDEOXY-BETA-D-GLYCERO-PENT-2-ENOFURANOSYL)THYMINE - A HIGHLY POTENT AND SELECTIVE ANTI-HIV AGENT [J].
MANSURI, MM ;
STARRETT, JE ;
GHAZZOULI, I ;
HITCHCOCK, MJM ;
STERZYCKI, RZ ;
BRANKOVAN, V ;
LIN, TS ;
AUGUST, EM ;
PRUSOFF, WH ;
SOMMADOSSI, JP ;
MARTIN, JC .
JOURNAL OF MEDICINAL CHEMISTRY, 1989, 32 (02) :461-466
[22]   COMPARISON OF INVITRO BIOLOGICAL PROPERTIES AND MOUSE TOXICITIES OF 3 THYMIDINE ANALOGS ACTIVE AGAINST HUMAN-IMMUNODEFICIENCY-VIRUS [J].
MANSURI, MM ;
HITCHCOCK, MJM ;
BUROKER, RA ;
BREGMAN, CL ;
GHAZZOULI, I ;
DESIDERIO, JV ;
STARRETT, JE ;
STERZYCKI, RZ ;
MARTIN, JC .
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY, 1990, 34 (04) :637-641
[23]   INHIBITION OF HIV-ASSOCIATED REVERSE-TRANSCRIPTASE BY SUGAR-MODIFIED DERIVATIVES OF THYMIDINE 5'-TRIPHOSPHATE IN COMPARISON TO CELLULAR DNA POLYMERASE-ALPHA AND POLYMERASE-BETA [J].
MATTHES, E ;
LEHMANN, C ;
SCHOLZ, D ;
VONJANTALIPINSKI, M ;
GAERTNER, K ;
ROSENTHAL, HA ;
LANGEN, P .
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 1987, 148 (01) :78-85
[24]   DIRECT COMPARISONS OF INHIBITOR SENSITIVITIES OF REVERSE TRANSCRIPTASES FROM FELINE AND HUMAN IMMUNODEFICIENCY VIRUSES [J].
NORTH, TW ;
CRONN, RC ;
REMINGTON, KM ;
TANDBERG, RT .
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY, 1990, 34 (08) :1505-1507
[25]  
ONO K, 1989, MOL PHARMACOL, V35, P578
[26]   A COMPARISON OF THE CONFORMATIONS OF THE 5'-TRIPHOSPHATES OF ZIDOVUDINE (AZT) AND THYMIDINE BOUND TO HIV-1 REVERSE-TRANSCRIPTASE [J].
PAINTER, GR ;
AULABAUGH, AE ;
ANDREWS, CW .
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 1993, 191 (03) :1166-1171
[27]  
PAPCHIKHIN AV, 1985, BIOORG KHIM+, V11, P1367
[28]  
PARNO WB, 1991, J BIOL CHEM, V226, P1754
[29]   STRUCTURES OF TERNARY COMPLEXES OF RAT DNA-POLYMERASE-BETA, A DNA TEMPLATE-PRIMER, AND DDCTP [J].
PELLETIER, H ;
SAWAYA, MR ;
KUMAR, A ;
WILSON, SH ;
KRAUT, J .
SCIENCE, 1994, 264 (5167) :1891-1903
[30]  
SAWAYA MR, 1994, SCIENCE, V73, P1123