Genomics-inspired discovery of natural products

被引:181
作者
Winter, Jaclyn M. [1 ]
Behnken, Swantje [1 ]
Hertweck, Christian [1 ,2 ]
机构
[1] HKI, Leibniz Inst Nat Prod Res & Infect Biol, D-07745 Jena, Germany
[2] Univ Jena, D-07743 Jena, Germany
关键词
NONRIBOSOMAL PEPTIDE SYNTHETASES; GENE CLUSTERS; POLYKETIDE SYNTHASES; ASPERGILLUS-NIDULANS; HETEROLOGOUS EXPRESSION; STIGMATELLA-AURANTIACA; SECONDARY METABOLITES; BIOSYNTHETIC-PATHWAY; BIOLOGICAL-ACTIVITY; BACILLUS-SUBTILIS;
D O I
10.1016/j.cbpa.2010.10.020
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The massive surge in genome sequencing projects has opened our eyes to the overlooked biosynthetic potential and metabolic diversity of microorganisms. While traditional approaches have been successful at identifying many useful therapeutic agents from these organisms, new tactics are needed in order to exploit their true biosynthetic potential. Several genomics-inspired strategies have been successful in unveiling new metabolites that were overlooked under standard fermentation and detection conditions. In addition, genome sequences have given us valuable insight for genetically engineering biosynthesis gene clusters that remain silent or are poorly expressed in the absence of a specific trigger. As more genome sequences are becoming available, we are noticing the emergence of underexplored or neglected organisms as alternative resources for new therapeutic agents.
引用
收藏
页码:22 / 31
页数:10
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[31]   Natural products as sources of new drugs over the last 25 years [J].
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