Diversity, stability and resilience of the human gut microbiota

被引:3742
作者
Lozupone, Catherine A. [1 ]
Stombaugh, Jesse I. [1 ]
Gordon, Jeffrey I. [2 ]
Jansson, Janet K. [3 ,4 ]
Knight, Rob [1 ,5 ,6 ]
机构
[1] Univ Colorado, Dept Chem & Biochem, Boulder, CO 80309 USA
[2] Washington Univ, Ctr Genome Sci & Syst Biol, St Louis, MO USA
[3] Univ Calif Berkeley, Lawrence Berkeley Natl Lab, Div Earth Sci, Berkeley, CA 94720 USA
[4] Lawrence Berkeley Natl Lab, Joint Genome Inst, Walnut Creek, CA USA
[5] Univ Colorado, Howard Hughes Med Inst, Boulder, CO 80309 USA
[6] Univ Colorado, Biofrontiers Inst, Boulder, CO 80309 USA
关键词
INFLAMMATORY-BOWEL-DISEASE; INTESTINAL MICROBIOTA; CLOSTRIDIUM-DIFFICILE; CROHNS-DISEASE; ANTIBIOTIC-TREATMENT; MOLECULAR ANALYSIS; FECAL MICROBIOTA; BODY HABITATS; SEQUENCE DATA; HUMAN COLON;
D O I
10.1038/nature11550
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Trillions of microbes inhabit the human intestine, forming a complex ecological community that influences normal physiology and susceptibility to disease through its collective metabolic activities and host interactions. Understanding the factors that underlie changes in the composition and function of the gut microbiota will aid in the design of therapies that target it. This goal is formidable. The gut microbiota is immensely diverse, varies between individuals and can fluctuate over time - especially during disease and early development. Viewing the microbiota from an ecological perspective could provide insight into how to promote health by targeting this microbial community in clinical treatments.
引用
收藏
页码:220 / 230
页数:11
相关论文
共 78 条
  • [71] Valentine D. L., 2012, P NATL ACAD SCI US
  • [72] COLONIZATION RESISTANCE OF DIGESTIVE TRACT OF MICE DURING SYSTEMIC ANTIBIOTIC TREATMENT
    VANDERWAAIJ, D
    BERGHUIS, JM
    LEKKERKERK, JE
    [J]. JOURNAL OF HYGIENE, 1972, 70 (04): : 605 - 610
  • [73] Shotgun metaproteomics of the human distal gut microbiota
    Verberkmoes, Nathan C.
    Russell, Alison L.
    Shah, Manesh
    Godzik, Adam
    Rosenquist, Magnus
    Halfvarson, Jonas
    Lefsrud, Mark G.
    Apajalahti, Juha
    Tysk, Curt
    Hettich, Robert L.
    Jansson, Janet K.
    [J]. ISME JOURNAL, 2009, 3 (02) : 179 - 189
  • [74] A Pyrosequencing Study in Twins Shows That Gastrointestinal Microbial Profiles Vary With Inflammatory Bowel Disease Phenotypes
    Willing, Ben P.
    Dicksved, Johan
    Halfvarson, Jonas
    Andersson, Anders F.
    Lucio, Marianna
    Zheng, Zongli
    Jarnerot, Gunnar
    Tysk, Curt
    Jansson, Janet K.
    Engstrand, Lars
    [J]. GASTROENTEROLOGY, 2010, 139 (06) : 1844 - U105
  • [75] Linking Long-Term Dietary Patterns with Gut Microbial Enterotypes
    Wu, Gary D.
    Chen, Jun
    Hoffmann, Christian
    Bittinger, Kyle
    Chen, Ying-Yu
    Keilbaugh, Sue A.
    Bewtra, Meenakshi
    Knights, Dan
    Walters, William A.
    Knight, Rob
    Sinha, Rohini
    Gilroy, Erin
    Gupta, Kernika
    Baldassano, Robert
    Nessel, Lisa
    Li, Hongzhe
    Bushman, Frederic D.
    Lewis, James D.
    [J]. SCIENCE, 2011, 334 (6052) : 105 - 108
  • [76] GROWTH-INHIBITION OF CLOSTRIDIUM-DIFFICILE BY INTESTINAL FLORA OF INFANT FECES IN CONTINUOUS-FLOW CULTURE
    YAMAMOTOOSAKI, T
    KAMIYA, S
    SAWAMURA, S
    KAI, M
    OZAWA, A
    [J]. JOURNAL OF MEDICAL MICROBIOLOGY, 1994, 40 (03) : 179 - 187
  • [77] Human gut microbiome viewed across age and geography
    Yatsunenko, Tanya
    Rey, Federico E.
    Manary, Mark J.
    Trehan, Indi
    Dominguez-Bello, Maria Gloria
    Contreras, Monica
    Magris, Magda
    Hidalgo, Glida
    Baldassano, Robert N.
    Anokhin, Andrey P.
    Heath, Andrew C.
    Warner, Barbara
    Reeder, Jens
    Kuczynski, Justin
    Caporaso, J. Gregory
    Lozupone, Catherine A.
    Lauber, Christian
    Clemente, Jose Carlos
    Knights, Dan
    Knight, Rob
    Gordon, Jeffrey I.
    [J]. NATURE, 2012, 486 (7402) : 222 - +
  • [78] Antibiotic-associated diarrhea accompanied by large-scale alterations in the composition of the fecal microbiota
    Young, VB
    Schmidt, TM
    [J]. JOURNAL OF CLINICAL MICROBIOLOGY, 2004, 42 (03) : 1203 - 1206