Functional evidence of post-transcriptional regulation by pseudogenes

被引:62
作者
Muro, Enrique M. [1 ]
Mah, Nancy [1 ]
Andrade-Navarro, Miguel A. [1 ]
机构
[1] Max Delbruck Ctr Mol Med MDC, D-13125 Berlin, Germany
关键词
Pseudogenes; ncRNA; Natural antisense transcripts; siRNA; miRNA; MESSENGER-RNA STABILITY; HOMOLOGOUS CODING GENE; FETAL GAMMA-GLOBIN; PROCESSED PSEUDOGENES; GENOME ANNOTATION; RECEPTOR GENES; CHARON PHAGES; MOUSE OOCYTES; DNA CLONING; EVOLUTION;
D O I
10.1016/j.biochi.2011.07.024
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Pseudogenes have been mainly considered as functionless evolutionary relics since their discovery in 1977. However, multiple mechanisms of pseudogene functionality have been proposed both at the transcriptional and post-transcriptional level. This review focuses on the role of pseudogenes as post-transcriptional regulators. Two lines of research have recently presented strong evidence of their potential function as post-transcriptional regulators of the corresponding parental genes from which they originate. First, pseudogene genomic sequences can encode siRNAs. Second, pseudogene transcripts can act as indirect post-transcriptional regulators decoying ncRNA, in particular miRNAs that target the parental gene. This has been demonstrated for PTEN and KRAS, two genes involved in tumorigenesis. The role of pseudogenes in disease has not been proven and seems to be the next research landmark. In this review, we chronicle the events following the initial discovery of the 'useless' pseudogene to its breakthrough as a functional molecule with hitherto unbeknownst potential to influence human disease. (C) 2011 Elsevier Masson SAS. All rights reserved.
引用
收藏
页码:1916 / 1921
页数:6
相关论文
共 63 条
[11]   The putatively functional Mkrn1-p1 pseudogene is neither expressed nor imprinted, nor does it regulate its source gene in trans [J].
Gray, Todd A. ;
Wilson, Alison ;
Fortin, Patrick J. ;
Nicholls, Robert D. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2006, 103 (32) :12039-12044
[12]   Small RNAs Originated from Pseudogenes: cis- or trans-Acting? [J].
Guo, Xingyi ;
Zhang, Zhaolei ;
Gerstein, Mark B. ;
Zheng, Deyou .
PLOS COMPUTATIONAL BIOLOGY, 2009, 5 (07)
[13]   STRUCTURE AND TRANSCRIPTION OF 4 LINKED RABBIT BETA-LIKE GLOBIN GENES [J].
HARDISON, RC ;
BUTLER, ET ;
LACY, E ;
MANIATIS, T .
CELL, 1979, 18 (04) :1285-1297
[14]   Transcribed processed pseudogenes in the human genome: an intermediate form of expressed retrosequence lacking protein-coding ability [J].
Harrison, PM ;
Zheng, DY ;
Zhang, ZL ;
Carriero, N ;
Gerstein, M .
NUCLEIC ACIDS RESEARCH, 2005, 33 (08) :2374-2383
[15]   The L-gulono-gamma-lactone oxidase gene (GULO) which is a candidate for vitamin C deficiency in pigs maps to chromosome 14 [J].
Hasan, L ;
Vögeli, P ;
Neuenschwander, S ;
Stoll, P ;
Meijerink, E ;
Stricker, C ;
Jörg, H ;
Stranzinger, G .
ANIMAL GENETICS, 1999, 30 (04) :309-312
[16]   Transcriptional regulation of Oct4 by a long non-coding RNA antisense to Oct4-pseudogene 5 [J].
Hawkins, Peter G. ;
Morris, Kevin, V .
TRANSCRIPTION-AUSTIN, 2010, 1 (03) :165-175
[17]   An expressed pseudogene regulates the messenger-RNA stability of its homologous coding gene [J].
Hirotsune, S ;
Yoshida, N ;
Chen, A ;
Garrett, L ;
Sugiyama, F ;
Takahashi, S ;
Yagami, K ;
Wynshaw-Boris, A ;
Yoshiki, A .
NATURE, 2003, 423 (6935) :91-96
[18]   PSEUDOGENE STRUCTURE IN 5S-DNA OF XENOPUS-LAEVIS [J].
JACQ, C ;
MILLER, JR ;
BROWNLEE, GG .
CELL, 1977, 12 (01) :109-120
[19]   ISOLATION AND SEQUENCE-ANALYSIS OF A HYBRID DELTA-GLOBIN PSEUDOGENE FROM THE BROWN LEMUR [J].
JEFFREYS, AJ ;
BARRIE, PA ;
HARRIS, S ;
FAWCETT, DH ;
NUGENT, ZJ ;
BOYD, AC .
JOURNAL OF MOLECULAR BIOLOGY, 1982, 156 (03) :487-503
[20]   Connexin43 pseudogene is expressed in tumor cells and inhibits growth [J].
Kandouz, M ;
Bier, A ;
Carystinos, GD ;
Alaoui-Jamali, MA ;
Batist, G .
ONCOGENE, 2004, 23 (27) :4763-4770