Opinion - Genomic fluidity and pathogenic bacteria: applications in diagnostics, epidemiology and intervention

被引：136

作者：

Ahmed, Niyaz ^{[2
]}

Dobrindt, Ulrich ^{[1
]}

Hacker, Joerg ^{[1
,3
]}

Hasnain, Seyed E. ^{[4
,5
,6
]}

机构：

[1] Univ Wurzburg, Inst Mol Biol Infect Dis, D-97070 Wurzburg, Germany

[2] Ctr DNA Fingerpriting & Diagnost, Pathogen Evolut Lab, Hyderabad 500076, Andhra Pradesh, India

[3] Robert Koch Inst, D-13353 Berlin, Germany

[4] Univ Hyderabad, Hyderabad 500046, Andhra Pradesh, India

[5] Inst Life Sci, Hyderabad 500046, Andhra Pradesh, India

[6] Indian Inst Sci, Jawaharlal Nehru Ctr Adv Sci Res, Bangalore 560064, Karnataka, India

来源：

NATURE REVIEWS MICROBIOLOGY | 2008年 / 6卷 / 05期

关键词：

D O I：

10.1038/nrmicro1889

中图分类号：

Q93 [微生物学];

学科分类号：

071005 ; 100705 ;

摘要：

The increasing availability of DNA-sequence information for multiple pathogenic and non-pathogenic variants of individual bacterial species has indicated that both DNA acquisition and genome reduction have important roles in genome evolution. Such genomic fluidity, which is found in human pathogens such as Escherichia coli, Helicobacter pylori and Mycobacterium tuberculosis, has important consequences for the clinical management of the diseases that are caused by these pathogens and for the development of diagnostics and new molecular epidemiological methods.

引用

页码：387 / 394

页数：8

共 110 条

[1] Yersinia pestis, the cause of plague, is a recently emerged clone of Yersinia pseudotuberculosis [J].

Achtman, M ;

Zurth, K ;

Morelli, C ;

Torrea, G ;

Guiyoule, A ;

Carniel, E .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1999, 96 (24) :14043-14048

[2] Microevolution and history of the plague bacillus, Yersinia pestis [J].

Achtman, M ;

Morelli, G ;

Zhu, PX ;

Wirth, T ;

Diehl, I ;

Kusecek, B ;

Vogler, AJ ;

Wagner, DM ;

Allender, CJ ;

Easterday, WR ;

Chenal-Francisque, V ;

Worsham, P ;

Thomson, NR ;

Parkhill, J ;

Lindler, LE ;

Carniel, E ;

Keim, P .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2004, 101 (51) :17837-17842

[3] Molecular genotyping of a large, multicentric collection of tubercle bacilli indicates geographical partitioning of strain variation and has implications for global epidemiology of Mycobacterium tuberculosis [J].

Ahmed, N ;

Alam, M ;

Rao, KR ;

Kauser, F ;

Kumar, NA ;

Qazi, NN ;

Sangal, V ;

Sharma, VD ;

Das, R ;

Katoch, VM ;

Murthy, KJR ;

Suneetha, S ;

Sharma, SK ;

Sechi, LA ;

Gilman, RH ;

Hasnain, SE .

JOURNAL OF CLINICAL MICROBIOLOGY, 2004, 42 (07) :3240-3247

[4] Distinctiveness of Mycobacterium tuberculosis genotypes from human immunodeficiency virus type 1-seropositive and -seronegative patients in Lima, Peru [J].

Ahmed, N ;

Caviedes, L ;

Alam, M ;

Rao, KR ;

Sangal, V ;

Sheen, P ;

Gilman, RH ;

Hasnain, SE .

JOURNAL OF CLINICAL MICROBIOLOGY, 2003, 41 (04) :1712-1716

[5] Molecular Analysis of a Leprosy Immunotherapeutic Bacillus Provides Insights into Mycobacterium Evolution [J].

Ahmed, Niyaz ;

Saini, Vikram ;

Raghuvanshi, Saurabh ;

Khurana, Jitendra P. ;

Tyagi, Akhilesh K. ;

Tyagi, Anil K. ;

Hasnain, Seyed E. .

PLOS ONE, 2007, 2 (10)

[6] Helicobacter pylori and gastroduodenal pathology: New threats of the old friend [J].

Ahmed N. ;

Sechi L.A. .

Annals of Clinical Microbiology and Antimicrobials, 4 (1)

[7] Genome sequence based, comparative analysis of the fluorescent amplified fragment length polymorphisms (FAFLP) of tubercle bacilli from seals provides molecular evidence for a new species within the Mycobacterium tuberculosis complex [J].

Ahmed, Niyaz ;

Alam, Mahfooz ;

Majeed, A. Abdul ;

Rahman, S. Asad ;

Cataldi, Angel ;

Cousins, Debby ;

Hasnain, Seyed E. .

INFECTION GENETICS AND EVOLUTION, 2003, 2 (03) :193-199

[8] Genomic-sequence comparison of two unrelated isolates of the human gastric pathogen Helicobacter pylori [J].

Alm, RA ;

Ling, LSL ;

Moir, DT ;

King, BL ;

Brown, ED ;

Doig, PC ;

Smith, DR ;

Noonan, B ;

Guild, BC ;

deJonge, BL ;

Carmel, G ;

Tummino, PJ ;

Caruso, A ;

Uria-Nickelsen, M ;

Mills, DM ;

Ives, C ;

Gibson, R ;

Merberg, D ;

Mills, SD ;

Jiang, Q ;

Taylor, DE ;

Vovis, GF ;

Trost, TJ .

NATURE, 1999, 397 (6715) :176-180

[9] The probiotic Escherichia coli strain Nissle 1917 interferes with invasion of human intestinal epithelial cells by different enteroinvasive bacterial pathogens [J].

Altenhoefer, A ;

Oswald, S ;

Sonnenborn, U ;

Enders, C ;

Schulze, J ;

Hacker, J ;

Oelschlaeger, TA .

FEMS IMMUNOLOGY AND MEDICAL MICROBIOLOGY, 2004, 40 (03) :223-229

[10] Simple method for determination of the number of Helicobacter pylori CagA variable-region EPIYA tyrosine phosphorylation motifs by PCR [J].

Argent, RH ;

Zhang, YL ;

Atherton, JC .

JOURNAL OF CLINICAL MICROBIOLOGY, 2005, 43 (02) :791-795

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