Transposons in biotechnologically relevant strains of Aspergillus niger and Penicillium chrysogenum

被引:18
作者
Braumann, Ilka
van den Berg, Marco
Kempken, Frank
机构
[1] Univ Kiel, Bot Inst & Bot Garten, D-24098 Kiel, Germany
[2] DSM Anti Infect, NL-2613 AX Delft, Netherlands
关键词
Aspergillus niger; Penicillium chrysogenum; transposon; vader; PeTra; ANiTa1;
D O I
10.1016/j.fgb.2007.07.010
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
In the past 15 years, many class I and class II transposons were identified in filamentous fungi. However, little is known about the influence of transposons during industrial strain development. The availability of the complete genome sequences of the industrially relevant fungi Aspergillus niger and Penicillium chrysogenum has enabled an analysis of transposons present in these two fungi. Here, a compilation of the transposon-like sequences identified is provided. We investigated a yet undescribed A. niger retrotransposon, ANiTa1, as well as two P. chrysogenum transposons (PeTra1 and PeTra2), which are the first P. chrysogenum transposons ever described, in more detail. Analysis of the genomic distribution of selected transposable elements in five strains of A. niger and seven strains of P. chrysogenum revealed the transposon distribution to be virtually identical. However, one element, Vader-previously published-from A. niger, showed strain-specific differences in transposon distribution, suggesting transposition activity during classical strain improvement programs. (c) 2007 Elsevier Inc. All rights reserved.
引用
收藏
页码:1399 / 1414
页数:16
相关论文
共 64 条
[41]   GeneMark.hmm: new solutions for gene finding [J].
Lukashin, AV ;
Borodovsky, M .
NUCLEIC ACIDS RESEARCH, 1998, 26 (04) :1107-1115
[42]   Genome sequencing and analysis of Aspergillus oryzae [J].
Machida, M ;
Asai, K ;
Sano, M ;
Tanaka, T ;
Kumagai, T ;
Terai, G ;
Kusumoto, KI ;
Arima, T ;
Akita, O ;
Kashiwagi, Y ;
Abe, K ;
Gomi, K ;
Horiuchi, H ;
Kitamoto, K ;
Kobayashi, T ;
Takeuchi, M ;
Denning, DW ;
Galagan, JE ;
Nierman, WC ;
Yu, JJ ;
Archer, DB ;
Bennett, JW ;
Bhatnagar, D ;
Cleveland, TE ;
Fedorova, ND ;
Gotoh, O ;
Horikawa, H ;
Hosoyama, A ;
Ichinomiya, M ;
Igarashi, R ;
Iwashita, K ;
Juvvadi, PR ;
Kato, M ;
Kato, Y ;
Kin, T ;
Kokubun, A ;
Maeda, H ;
Maeyama, N ;
Maruyama, J ;
Nagasaki, H ;
Nakajima, T ;
Oda, K ;
Okada, K ;
Paulsen, I ;
Sakamoto, K ;
Sawano, T ;
Takahashi, M ;
Takase, K ;
Terabayashi, Y ;
Wortman, JR .
NATURE, 2005, 438 (7071) :1157-1161
[43]   EVOLUTION AND CONSEQUENCES OF TRANSPOSABLE ELEMENTS [J].
MCDONALD, JF .
CURRENT OPINION IN GENETICS & DEVELOPMENT, 1993, 3 (06) :855-864
[44]   Foxy:: an active family of short interspersed nuclear elements from Fusarium oxysporum [J].
Mes, JJ ;
Haring, MA ;
Cornelissen, BJC .
MOLECULAR AND GENERAL GENETICS, 2000, 263 (02) :271-280
[45]   Taf1:: A class II transposon of Aspergillus fumigatus [J].
Monroy, F ;
Sheppard, DC .
FUNGAL GENETICS AND BIOLOGY, 2005, 42 (07) :638-645
[46]   Evidence of RIP (repeat-induced point mutation) in transposase sequences of Aspergillus oryzae [J].
Montiel, Maria D. ;
Lee, Heather A. ;
Archer, David B. .
FUNGAL GENETICS AND BIOLOGY, 2006, 43 (06) :439-445
[47]   Afut1, a retrotransposon-like element from Aspergillus fumigatus [J].
Neuveglise, C ;
Sarfati, J ;
Latge, JP ;
Paris, S .
NUCLEIC ACIDS RESEARCH, 1996, 24 (08) :1428-1434
[48]   Genomic evolution of the long terminal repeat retrotransposons in hemiascomycetous yeasts [J].
Neuvéglise, C ;
Feldmann, H ;
Bon, E ;
Gaillardin, C ;
Casaregola, S .
GENOME RESEARCH, 2002, 12 (06) :930-943
[49]   A family of DNA repeats in Aspergillus nidulans has assimilated degenerated retrotransposons [J].
Nielsen, ML ;
Hermansen, TD ;
Aleksenko, A .
MOLECULAR GENETICS AND GENOMICS, 2001, 265 (05) :883-887
[50]   Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus [J].
Nierman, WC ;
Pain, A ;
Anderson, MJ ;
Wortman, JR ;
Kim, HS ;
Arroyo, J ;
Berriman, M ;
Abe, K ;
Archer, DB ;
Bermejo, C ;
Bennett, J ;
Bowyer, P ;
Chen, D ;
Collins, M ;
Coulsen, R ;
Davies, R ;
Dyer, PS ;
Farman, M ;
Fedorova, N ;
Fedorova, N ;
Feldblyum, TV ;
Fischer, R ;
Fosker, N ;
Fraser, A ;
García, JL ;
García, MJ ;
Goble, A ;
Goldman, GH ;
Gomi, K ;
Griffith-Jones, S ;
Gwilliam, R ;
Haas, B ;
Haas, H ;
Harris, D ;
Horiuchi, H ;
Huang, J ;
Humphray, S ;
Jiménez, J ;
Keller, N ;
Khouri, H ;
Kitamoto, K ;
Kobayashi, T ;
Konzack, S ;
Kulkarni, R ;
Kumagai, T ;
Lafton, A ;
Latgé, JP ;
Li, WX ;
Lord, A ;
Majoros, WH .
NATURE, 2005, 438 (7071) :1151-1156