Entrez Gene: gene-centered information at NCBI

被引:556
作者
Maglott, Donna [1 ]
Ostell, Jim [1 ]
Pruitt, Kim D. [1 ]
Tatusova, Tatiana [1 ]
机构
[1] Natl Lib Med, Natl Ctr Biotechnol Informat, NIH, Rockville, MD 20852 USA
基金
美国国家卫生研究院;
关键词
D O I
10.1093/nar/gkq1237
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Entrez Gene (http://www.ncbi.nlm.nih.gov/gene) is National Center for Biotechnology Information (NCBI)'s database for gene-specific information. Entrez Gene maintains records from genomes which have been completely sequenced, which have an active research community to submit gene-specific information, or which are scheduled for intense sequence analysis. The content represents the integration of curation and automated processing from NCBI's Reference Sequence project (RefSeq), collaborating model organism databases, consortia such as Gene Ontology and other databases within NCBI. Records in Entrez Gene are assigned unique, stable and tracked integers as identifiers. The content (nomenclature, genomic location, gene products and their attributes, markers, phenotypes and links to citations, sequences, variation details, maps, expression, homologs, protein domains and external databases) is available via interactive browsing through NCBI's Entrez system, via NCBI's Entrez programming utilities (E-Utilities) and for bulk transfer by FTP.
引用
收藏
页码:D52 / D57
页数:6
相关论文
共 9 条
[1]   McKusick's Online Mendelian Inheritance in Man (OMIM®) [J].
Amberger, Joanna ;
Bocchini, Carol A. ;
Scott, Alan F. ;
Hamosh, Ada .
NUCLEIC ACIDS RESEARCH, 2009, 37 :D793-D796
[2]  
[Anonymous], NUCLEIC ACIDS RES S1
[3]  
[Anonymous], NUCL ACIDS RES
[4]  
Benson D. A., 2009, GenBank. Nucleic Acids Res., V37, pD46
[5]   The Gene Ontology in 2010: extensions and refinements The Gene Ontology Consortium [J].
Berardini, Tanya Z. ;
Li, Donghui ;
Huala, Eva ;
Bridges, Susan ;
Burgess, Shane ;
McCarthy, Fiona ;
Carbon, Seth ;
Lewis, Suzanna E. ;
Mungall, Christopher J. ;
Abdulla, Amina ;
Wood, Valerie ;
Feltrin, Erika ;
Valle, Giorgio ;
Chisholm, Rex L. ;
Fey, Petra ;
Gaudet, Pascale ;
Kibbe, Warren ;
Basu, Siddhartha ;
Bushmanova, Yulia ;
Eilbeck, Karen ;
Siegele, Deborah A. ;
McIntosh, Brenley ;
Renfro, Daniel ;
Zweifel, Adrienne ;
Hu, James C. ;
Ashburner, Michael ;
Tweedie, Susan ;
Alam-Faruque, Yasmin ;
Apweiler, Rolf ;
Auchinchloss, Andrea ;
Bairoch, Amos ;
Barrell, Daniel ;
Binns, David ;
Blatter, Marie-Claude ;
Bougueleret, Lydie ;
Boutet, Emmanuel ;
Breuza, Lionel ;
Bridge, Alan ;
Browne, Paul ;
Chan, Wei Mun ;
Coudert, Elizabeth ;
Daugherty, Louise ;
Dimmer, Emily ;
Eberhardt, Ruth ;
Estreicher, Anne ;
Famiglietti, Livia ;
Ferro-Rojas, Serenella ;
Feuermann, Marc ;
Foulger, Rebecca ;
Gruaz-Gumowski, Nadine .
NUCLEIC ACIDS RESEARCH, 2010, 38 :D331-D335
[6]   KEGG: Kyoto Encyclopedia of Genes and Genomes [J].
Kanehisa, M ;
Goto, S .
NUCLEIC ACIDS RESEARCH, 2000, 28 (01) :27-30
[7]   EcoCyc: A comprehensive view of Escherichia coli biology [J].
Keseler, Ingrid M. ;
Bonavides-Martinez, Cesar ;
Collado-Vides, Julio ;
Gama-Castro, Socorro ;
Gunsalus, Robert P. ;
Johnson, D. Aaron ;
Krummenacker, Markus ;
Nolan, Laura M. ;
Paley, Suzanne ;
Paulsen, Ian T. ;
Peralta-Gil, Martin ;
Santos-Zavaleta, Alberto ;
Glennon Shearer, Alexander ;
Karp, Peter D. .
NUCLEIC ACIDS RESEARCH, 2009, 37 :D464-D470
[8]   Reactome knowledgebase of human biological pathways and processes [J].
Matthews, Lisa ;
Gopinath, Gopal ;
Gillespie, Marc ;
Caudy, Michael ;
Croft, David ;
de Bono, Bernard ;
Garapati, Phani ;
Hemish, Jill ;
Hermjakob, Henning ;
Jassal, Bijay ;
Kanapin, Alex ;
Lewis, Suzanna ;
Mahajan, Shahana ;
May, Bruce ;
Schmidt, Esther ;
Vastrik, Imre ;
Wu, Guanming ;
Birney, Ewan ;
Stein, Lincoln ;
D'Eustachio, Peter .
NUCLEIC ACIDS RESEARCH, 2009, 37 :D619-D622
[9]   NCBI Reference Sequences: current status, policy and new initiatives [J].
Pruitt, Kim D. ;
Tatusova, Tatiana ;
Klimke, William ;
Maglott, Donna R. .
NUCLEIC ACIDS RESEARCH, 2009, 37 :D32-D36