The highly similar Arabidopsis homologs of trithorax ATX1 and ATX2 encode proteins with divergent biochemical functions

被引:173
作者
Saleh, Abdelaty [1 ,2 ]
Alvarez-Venegas, Raul [1 ,3 ]
Yilmaz, Mehtap [1 ,4 ]
Oahn-Le [1 ,5 ]
Hou, Guichuan [1 ,5 ]
Sadder, Monther [1 ,6 ]
Al-Abdallat, Ayed [1 ,6 ]
Xia, Yuannan [7 ]
Lu, Guoqinq [8 ]
Ladunga, Istvan [9 ,10 ]
Avramova, Zoya [1 ]
机构
[1] Univ Nebraska, Sch Biol Sci, Lincoln, NE 68588 USA
[2] N Carolina State Univ, Raleigh, NC 27606 USA
[3] Ctr Invest & Estudios Avanzados, Dept Genet Engn, Guanajuato 36281, Mexico
[4] Boston Univ, Dept Cell & Mol Biol, Boston, MA 02215 USA
[5] Appalachian State Univ, Microscopy Facil, Boone, NC 28608 USA
[6] Univ Jordan, Fac Agr, Amman 11942, Jordan
[7] Univ Nebraska, Ctr Biotechnol, Genom Core Res Facil, Lincoln, NE 68588 USA
[8] Univ Nebraska, Dept Biol, Omaha, NE 68182 USA
[9] Univ Nebraska, Ctr Biotechnol, Lincoln, NE 68588 USA
[10] Univ Nebraska, Dept Stat, Lincoln, NE 68588 USA
关键词
D O I
10.1105/tpc.107.056614
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Gene duplication followed by functional specialization is a potent force in the evolution of biological diversity. A comparative study of two highly conserved duplicated genes, ARABIDOPSIS TRITHORAX- LIKE PROTEIN1 (ATX1) and ATX2, revealed features of both partial redundancy and of functional divergence. Although structurally similar, their regulatory sequences have diverged, resulting in distinct temporal and spatial patterns of expression of the ATX1 and ATX2 genes. We found that ATX2 methylates only a limited fraction of nucleosomes and that ATX1 and ATX2 influence the expression of largely nonoverlapping gene sets. Even when coregulating shared targets, ATX1 and ATX2 may employ different mechanisms. Most remarkable is the divergence of their biochemical activities: both proteins methylate K4 of histone H3, but while ATX1 trimethylates it, ATX2 dimethylates it. ATX2 and ATX1 provide an example of separated K4 di from K4 trimethyltransferase activity.
引用
收藏
页码:568 / 579
页数:12
相关论文
共 61 条
[1]   SET-domain proteins of the Su(var)3-9, E(z) and trithorax families [J].
Alvarez-Venegas, R ;
Avramova, Z .
GENE, 2002, 285 (1-2) :25-37
[2]   The Arabidopsis homolog of trithorax, ATX1, binds phosphatidylinositol 5-phosphate, and the two regulate a common set of target genes [J].
Alvarez-Venegas, R ;
Sadder, M ;
Hlavacka, A ;
Baluska, F ;
Xia, YN ;
Lu, GQ ;
Firsov, A ;
Sarath, G ;
Moriyama, H ;
Dubrovsky, JG ;
Avramova, Z .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2006, 103 (15) :6049-6054
[3]   Methylation patterns of histone H3 Lys 4, Lys 9 and Lys 27 in transcriptionally active and inactive Arabidopsis genes and in atx1 mutants [J].
Alvarez-Venegas, R ;
Avramova, Z .
NUCLEIC ACIDS RESEARCH, 2005, 33 (16) :5199-5207
[4]   ATX-1, an Arabidopsis homolog of trithorax, activates flower homeotic genes [J].
Alvarez-Venegas, R ;
Pien, S ;
Sadder, M ;
Witmer, X ;
Grossniklaus, U ;
Avramova, Z .
CURRENT BIOLOGY, 2003, 13 (08) :627-637
[5]   Two Arabidopsis homologs of the animal trithorax genes:: a new structural domain is a signature feature of the trithorax gene family [J].
Alvarez-Venegas, R ;
Avramova, Z .
GENE, 2001, 271 (02) :215-221
[6]   Epigenetic control of a transcription factor at the cross section of two antagonistic pathways [J].
Alvarez-Venegas, Raul ;
Al Abdallat, Ayed ;
Guo, Ming ;
Alfano, James R. ;
Avramova, Zoya .
EPIGENETICS, 2007, 2 (02) :106-113
[7]   Phosphoinositide 5-Phosphate and Phosphoinositide 4-Phosphate Trigger Distinct Specific Responses of Arabidopsis Genes [J].
Alvarez-Venegas, Raul ;
Xia, Yuannan ;
Lu, Guoqing ;
Avramova, Zoya .
PLANT SIGNALING & BEHAVIOR, 2006, 1 (03) :140-151
[8]   Origin of the bacterial SET domain genes: Vertical or horizontal? [J].
Alvarez-Venegas, Raul ;
Sadder, Monther ;
Tikhonov, Alexander ;
Avramova, Zoya .
MOLECULAR BIOLOGY AND EVOLUTION, 2007, 24 (02) :482-497
[9]   The Arabidopsis thaliana genome contains at least 29 active genes encoding SET domain proteins that can be assigned to four evolutionarily conserved classes [J].
Baumbusch, LO ;
Thorstensen, T ;
Krauss, V ;
Fischer, A ;
Naumann, K ;
Assalkhou, R ;
Schulz, I ;
Reuter, G ;
Aalen, RB .
NUCLEIC ACIDS RESEARCH, 2001, 29 (21) :4319-4333
[10]   Developmental expression patterns of Arabidopsis XTH genes reported by transgenes and Genevestigator [J].
Becnel, Jaime ;
Natarajan, Mukil ;
Kipp, Alex ;
Braam, Janet .
PLANT MOLECULAR BIOLOGY, 2006, 61 (03) :451-467