Ribosome crystallography: catalysis and evolution of peptide-bond formation., nascent chain elongation and its co-translational folding

被引:15
作者
Bashan, A [1 ]
Yonath, A [1 ]
机构
[1] Weizmann Inst Sci, Dept Biol Struct, IL-76100 Rehovot, Israel
关键词
nascent chain elongation; peptide-bond formation; positional analysis; ribosome substrate-mediated catalysis; trigger factor;
D O I
10.1042/BST0330488
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
A ribosome is a ribozyme polymerizing amino acids, exploiting positional- and substrate-mediated chemical catalysis. We showed that peptide-bond formation is facilitated by the ribosomal architectural frame, provided by a sizable symmetry-related region in and around the peptidyl transferase centre, suggesting that the ribosomal active site was evolved by gene fusion. Mobility in tunnel components is exploited for elongation arrest as well as for trafficking nascent proteins into the folding space bordered by the bacterial chaperone, namely the trigger factor.
引用
收藏
页码:488 / 492
页数:5
相关论文
共 33 条
[11]  
Dall'Acqua W, 2000, PROTEIN SCI, V9, P1
[12]   The dynamic tunnel [J].
Etchells, SA ;
Hartl, FU .
NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2004, 11 (05) :391-392
[13]   Trigger factor in complex with the ribosome forms a molecular cradle for nascent proteins [J].
Ferbitz, L ;
Maier, T ;
Patzelt, H ;
Bukau, B ;
Deuerling, E ;
Ban, N .
NATURE, 2004, 431 (7008) :590-596
[14]   Folding of newly translated proteins in vivo: The role of molecular chaperones [J].
Frydman, J .
ANNUAL REVIEW OF BIOCHEMISTRY, 2001, 70 :603-647
[15]   High resolution structure of the large ribosomal subunit from a mesophilic Eubacterium [J].
Harms, J ;
Schluenzen, F ;
Zarivach, R ;
Bashan, A ;
Gat, S ;
Agmon, I ;
Bartels, H ;
Franceschi, F ;
Yonath, A .
CELL, 2001, 107 (05) :679-688
[16]   Protein folding - Molecular chaperones in the cytosol: from nascent chain to folded protein [J].
Hartl, FU ;
Hayer-Hartl, M .
SCIENCE, 2002, 295 (5561) :1852-1858
[17]  
Jencks W. P., 1969, CATALYSIS CHEM ENZYM
[18]   L23 protein functions as a chaperone docking site on the ribosome [J].
Kramer, G ;
Rauch, T ;
Rist, W ;
Vorderwülbecke, S ;
Patzelt, H ;
Schulze-Specking, A ;
Ban, N ;
Deuerling, E ;
Bukau, B .
NATURE, 2002, 419 (6903) :171-174
[19]   After the ribosome structures: How does peptidyl transferase work? [J].
Moore, PB ;
Steitz, TA .
RNA, 2003, 9 (02) :155-159
[20]   The ribosomal exit tunnel functions as a discriminating gate [J].
Nakatogawa, H ;
Ito, K .
CELL, 2002, 108 (05) :629-636