Prediction of the 1H and 13C NMR spectra of α-D-glucose in water by DFT methods and MD Simulations

被引:110
作者
Bagno, Alessandro
Rastrelli, Federico
Saielli, Giacomo
机构
[1] CNR, ITM, Sez Padova, I-35131 Padua, Italy
[2] Univ Padua, Dipartimento Sci Chim, I-35131 Padua, Italy
关键词
D O I
10.1021/jo071129v
中图分类号
O62 [有机化学];
学科分类号
070303 ; 081704 ;
摘要
[GRAPHICS] We have applied computational protocols based on DFT and molecular dynamics simulations to the prediction of the alkyl H-1 and C-13 chemical shifts Of alpha-D-glucose in water. Computed data have been compared with accurate experimental chemical shifts obtained in our laboratory. C-13 chemical shifts do not show a marked solvent effect. In contrast, the results for H-1 chemical shifts provided by structures optimized in the gas phase are only fair and point out that it is necessary to take into account both the flexibility of the glucose structure and the strong effect exerted by solvent water thereupon. Thus, molecular dynamics simulations were carried out to model both the internal geometry as well as the influence of solvent molecules on the conformational distribution of the solute. Snapshots from the simulation were used as input to DFT NMR calculations with varying degrees of sophistication. The most important factor that affects the accuracy of computed H-1 chemical shifts is the solute geometry; the effect of the solvent on the shielding constants can be reasonably accounted for by self-consistent reaction field models without the need of explicitly including solvent molecules in the NMR property calculation.
引用
收藏
页码:7373 / 7381
页数:9
相关论文
共 89 条
[71]   H-1-NMR STUDIES OF (6R)-DEUTERATED AND (6S)-DEUTERATED D-HEXOSES - ASSIGNMENT OF THE PREFERRED ROTAMERS ABOUT C5-C6 BOND OF D-GLUCOSE AND D-GALACTOSE DERIVATIVES IN SOLUTIONS [J].
NISHIDA, Y ;
OHRUI, H ;
MEGURO, H .
TETRAHEDRON LETTERS, 1984, 25 (15) :1575-1578
[72]   H-1-NMR ANALYSES OF ROTAMERIC DISTRIBUTION OF C5-C6 BONDS OF D-GLUCOPYRANOSES IN SOLUTION [J].
NISHIDA, Y ;
HORI, H ;
OHRUI, H ;
MEGURO, H .
JOURNAL OF CARBOHYDRATE CHEMISTRY, 1988, 7 (01) :239-250
[73]  
PASCHEK D, 2002, MOSCITO, V4
[74]   Spectroscopic properties in the liquid phase: Combining high-level ab initio calculations and classical molecular dynamics [J].
Pavone, M ;
Brancato, G ;
Morelli, G ;
Barone, V .
CHEMPHYSCHEM, 2006, 7 (01) :148-156
[75]   DENSITY-FUNCTIONAL APPROXIMATION FOR THE CORRELATION-ENERGY OF THE INHOMOGENEOUS ELECTRON-GAS [J].
PERDEW, JP .
PHYSICAL REVIEW B, 1986, 33 (12) :8822-8824
[76]   An implementation of the conductor-like screening model of solvation within the Amsterdam density functional package [J].
Pye, CC ;
Ziegler, T .
THEORETICAL CHEMISTRY ACCOUNTS, 1999, 101 (06) :396-408
[77]   Conformation of the galactose ring adopted in solution and in crystalline form as determined by experimental and DFT 1H NMR and single-crystal X-ray analysis [J].
Roslund, MU ;
Klika, KD ;
Lehtilä, RL ;
Tähtinen, P ;
Sillanpää, R ;
Leino, R .
JOURNAL OF ORGANIC CHEMISTRY, 2004, 69 (01) :18-25
[78]   Predicting NMR spectra by computational methods: Structure revision of hexacyclinol [J].
Rychnovsky, Scott D. .
ORGANIC LETTERS, 2006, 8 (13) :2895-2898
[79]   NUMERICAL-INTEGRATION OF CARTESIAN EQUATIONS OF MOTION OF A SYSTEM WITH CONSTRAINTS - MOLECULAR-DYNAMICS OF N-ALKANES [J].
RYCKAERT, JP ;
CICCOTTI, G ;
BERENDSEN, HJC .
JOURNAL OF COMPUTATIONAL PHYSICS, 1977, 23 (03) :327-341
[80]  
SCHLEUCHER J, 1994, J BIOMOL NMR, V4, P301