Non-coding RNAs:: hope or hype?

被引:320
作者
Hüttenhofer, A
Schattner, P
Polacek, N
机构
[1] Innsbruck Med Univ, Bioctr, Div Genom & RNom, A-6020 Innsbruck, Austria
[2] Univ Calif Santa Cruz, Ctr Biomol Sci & Engn, Santa Cruz, CA 95064 USA
基金
奥地利科学基金会;
关键词
D O I
10.1016/j.tig.2005.03.007
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
The past four years have seen an explosion in the number of detected RNA transcripts with no apparent protein-coding potential. This has led to speculation that non-protein-coding RNAs (ncRNAs) might be as important as proteins in the regulation of vital cellular functions. However, there has been significantly less progress in actually demonstrating the functions of these transcripts. In this article, we review the results of recent experiments that show that transcription of nonprotein-coding RNA is far more widespread than was previously anticipated. Although some ncRNAs act as molecular switches that regulate gene expression, the function of many ncRNAs is unknown. New experimental and computational approaches are emerging that will help determine whether these newly identified transcription products are evidence of important new biochemical pathways or are merely 'junk' RNA generated by the cell as a by-product of its functional activities.
引用
收藏
页码:289 / 297
页数:9
相关论文
共 84 条
[31]   Dicer functions in RNA interference and in synthesis of small RNA involved in developmental timing in C-elegans [J].
Ketting, RF ;
Fischer, SEJ ;
Bernstein, E ;
Sijen, T ;
Hannon, GJ ;
Plasterk, RHA .
GENES & DEVELOPMENT, 2001, 15 (20) :2654-2659
[32]   Human box H/ACA pseudouridylation guide RNA machinery [J].
Kiss, AM ;
Jády, BE ;
Bertrand, E ;
Kiss, T .
MOLECULAR AND CELLULAR BIOLOGY, 2004, 24 (13) :5797-5807
[33]   Noncoding RNA genes identified in AT-rich hyperthermophiles [J].
Klein, RJ ;
Misulovin, Z ;
Eddy, SR .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2002, 99 (11) :7542-7547
[34]  
Korneev SA, 1999, J NEUROSCI, V19, P7711
[35]   Initial sequencing and analysis of the human genome [J].
Lander, ES ;
Int Human Genome Sequencing Consortium ;
Linton, LM ;
Birren, B ;
Nusbaum, C ;
Zody, MC ;
Baldwin, J ;
Devon, K ;
Dewar, K ;
Doyle, M ;
FitzHugh, W ;
Funke, R ;
Gage, D ;
Harris, K ;
Heaford, A ;
Howland, J ;
Kann, L ;
Lehoczky, J ;
LeVine, R ;
McEwan, P ;
McKernan, K ;
Meldrim, J ;
Mesirov, JP ;
Miranda, C ;
Morris, W ;
Naylor, J ;
Raymond, C ;
Rosetti, M ;
Santos, R ;
Sheridan, A ;
Sougnez, C ;
Stange-Thomann, N ;
Stojanovic, N ;
Subramanian, A ;
Wyman, D ;
Rogers, J ;
Sulston, J ;
Ainscough, R ;
Beck, S ;
Bentley, D ;
Burton, J ;
Clee, C ;
Carter, N ;
Coulson, A ;
Deadman, R ;
Deloukas, P ;
Dunham, A ;
Dunham, I ;
Durbin, R ;
French, L .
NATURE, 2001, 409 (6822) :860-921
[36]   In search of antisense [J].
Lavorgna, G ;
Dahary, D ;
Lehner, B ;
Sorek, R ;
Sanderson, CM ;
Casari, G .
TRENDS IN BIOCHEMICAL SCIENCES, 2004, 29 (02) :88-94
[37]   Prediction of mammalian microRNA targets [J].
Lewis, BP ;
Shih, IH ;
Jones-Rhoades, MW ;
Bartel, DP ;
Burge, CB .
CELL, 2003, 115 (07) :787-798
[38]   Small nucleolar RNA interference induced by antisense or double-stranded RNA in trypanosomatids [J].
Liang, XH ;
Liu, Q ;
Michaeli, S .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2003, 100 (13) :7521-7526
[39]   Vertebrate MicroRNA genes [J].
Lim, LP ;
Glasner, ME ;
Yekta, S ;
Burge, CB ;
Bartel, DP .
SCIENCE, 2003, 299 (5612) :1540-1540
[40]   The microRNAs of Caenorhabditis elegans [J].
Lim, LP ;
Lau, NC ;
Weinstein, EG ;
Abdelhakim, A ;
Yekta, S ;
Rhoades, MW ;
Burge, CB ;
Bartel, DP .
GENES & DEVELOPMENT, 2003, 17 (08) :991-1008