Complete genome sequence of Aminobacterium colombiense type strain (ALA-1T)

被引：28

作者：

Chertkov, Olga ^{[2
,3
]}

Sikorski, Johannes ^{[1
]}

Brambilla, Evelyne ^{[1
]}

Lapidus, Alla ^{[2
]}

Copeland, Alex ^{[2
]}

Del Rio, Tijana Glavina ^{[2
]}

Nolan, Matt ^{[2
]}

Lucas, Susan ^{[2
]}

Tice, Hope ^{[2
]}

Cheng, Jan-Fang ^{[2
]}

Han, Cliff ^{[2
,4
]}

Detter, John C. ^{[2
,4
]}

Bruce, David ^{[2
,4
]}

Tapia, Roxanne ^{[2
,4
]}

Goodwin, Lynne ^{[2
,4
]}

Pitluck, Sam ^{[2
]}

Liolios, Konstantinos ^{[2
]}

Ivanova, Natalia ^{[2
]}

Mavromatis, Konstantinos ^{[2
]}

Ovchinnikova, Galina ^{[2
]}

Pati, Amrita ^{[2
]}

Chen, Amy ^{[5
]}

Palaniappan, Krishna ^{[5
]}

Land, Miriam ^{[2
,3
]}

Hauser, Loren ^{[2
,3
]}

Chang, Yun-Juan ^{[2
,3
]}

Jeffries, Cynthia D. ^{[2
,3
]}

Spring, Stefan ^{[1
]}

Rohde, Manfred ^{[6
]}

Goeker, Markus ^{[1
]}

Bristow, James ^{[2
]}

Eisen, Jonathan A. ^{[2
,7
]}

Markowitz, Victor ^{[5
]}

Hugenholtz, Philip ^{[2
]}

Kyrpides, Nikos C. ^{[2
]}

Klenk, Hans-Peter ^{[1
]}

机构：

[1] DSMZ German Collect Microorganisms & Cell Culture, Braunschweig, Germany

[2] US DOE, Joint Genome Inst, Walnut Creek, CA USA

[3] Oak Ridge Natl Lab, Oak Ridge, TN USA

[4] Los Alamos Natl Lab, Biosci Div, Los Alamos, NM USA

[5] Univ Calif Berkeley, Lawrence Berkeley Lab, Biol Data Management & Technol Ctr, Berkeley, CA 94720 USA

[6] HZI Helmholtz Ctr Infect Res, Braunschweig, Germany

[7] Univ Calif Davis, Genome Ctr, Davis, CA 95616 USA

来源：

STANDARDS IN GENOMIC SCIENCES | 2010年 / 2卷 / 03期

关键词：

strictly anaerobic; fermentation of amino acids; Gram-negative staining; syntrophic organism; Synergistaceae; GEBA; ACID-DEGRADING BACTERIUM; MOBILE SP NOV; GEN; NOV; EMENDED DESCRIPTION; ANAEROBIC SLUDGE; ARCHAEA; IDENTIFICATION; ANAEROBACULUM; SYSTEM; GRAPHS;

D O I：

10.4056/sigs.902116

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

Aminobacterium colombiense Baena et al. 1999 is the type species of the genus Aminobacterium. This genus is of large interest because of its isolated phylogenetic location in the family Synergistaceae, its strictly anaerobic lifestyle, and its ability to grow by fermentation of a limited range of amino acids but not carbohydrates. Here we describe the features of this organism, together with the complete genome sequence and annotation. This is the second completed genome sequence of a member of the family Synergistaceae and the first genome sequence of a member of the genus Aminobacterium. The 1,980,592 bp long genome with its 1,914 protein-coding and 56 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

引用

页码：280 / 289

页数：10

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